View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20070_high_2 (Length: 777)
Name: NF20070_high_2
Description: NF20070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20070_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 1 - 761
Target Start/End: Complemental strand, 47492863 - 47492116
Alignment:
| Q |
1 |
tatttaaaccaattatctatgtatattatcaattaattaaatgttgtctataagtcctagtccaatcggnnnnnnncccaaaattattaggttgaatgtc |
100 |
Q |
| |
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|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||| |
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| T |
47492863 |
tatttaaaccaattatctattattattatcaaataattaaatgttgtctataagtcctagtacaatcggcaaaaataccaaaattgttaggttgaatgtc |
47492764 |
T |
|
| Q |
101 |
tgtgatatgggttcaaatgtcgtgatcggaattcgaacatcgaccactccatcgtgatagatctcccgttattgagcaattgataaggagatatataggc |
200 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
47492763 |
tctgatatgggttcaaatgtcgtgatcggaattcgaacatcgaccactccatcgtgataggtctcccgttattgagcaattgataaggagatatataggc |
47492664 |
T |
|
| Q |
201 |
atatggaacaacatacctcatttgagagcacatcatattttagaatgtctcctccatccaaattcagtccaaccctattt-nnnnnnngtagtgcttgat |
299 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
47492663 |
atatggaacaacataccttatttgagagcacatcatattttaggatgtctcctccatccaaattcggtccaaccctatttaaaaaaaagtagtgcttgat |
47492564 |
T |
|
| Q |
300 |
gacatttataaaattgaaaaggcttggacagtagagggatccacacctccaaggatgcagacgacatttcttttactacttaacgaataaagaagttaaa |
399 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
47492563 |
gacatttataaaattgaaaaggcttggacagtagagggatccacacctc-------gcagacgatatttcttttactacttaacgaataaagaagtcaaa |
47492471 |
T |
|
| Q |
400 |
gaaaatgcaagttaaattaaaacaagcagttgagacacacaacactcggttaacaggtcttctttcaacaagttctccatgaagctcttttattggaact |
499 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
47492470 |
gaaaatgcaagttaaattaaaagaagcagttgagacacacaatactcggttaacgggtcttctttcaacaagttctccatgaagttcctttattggaact |
47492371 |
T |
|
| Q |
500 |
ttcaaggggaaatcaacctatgaacctttggggtaagtgaaatcgaaattcaaactttattacttatgataaagatcaaggtgattagaattgccatggt |
599 |
Q |
| |
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| T |
47492370 |
ttcaagggaaaatcaacctatgaacctttggggtaagtg-------aattcaaactttattacttatgataaagatcaaggtgattagaattgccattgt |
47492278 |
T |
|
| Q |
600 |
ttaaaaaagtttcgatattatttttctaaattggggatggagaatannnnnnnnaaggggaaatggaaaacattttaattaattaaagttgcactaatta |
699 |
Q |
| |
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| T |
47492277 |
ttaaaaaagtttcgatattatttttctaaattggggatggagaattttttttttaaggggaaatgtaaaacattttaattaattaaagttgcactaatta |
47492178 |
T |
|
| Q |
700 |
ctaatttacaattgtctttgagagaatttaaactttgtattttgtggttacaagtttaacct |
761 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47492177 |
ctaatttacaattgtctttgagagaatttaaactttgtattttgtggttacaagtttaacct |
47492116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 427 - 761
Target Start/End: Complemental strand, 33805270 - 33804936
Alignment:
| Q |
427 |
agttgagacacacaacactcggttaacaggtcttctttcaacaagttctccatgaagctcttttattggaactttcaaggggaaatcaacctatgaacct |
526 |
Q |
| |
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||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
33805270 |
agttgagacacacaatactcggttaacgggtcttcttctaacaagttctccatgaagttcctttattggaactttcaaggggaaatcaacctatgaacct |
33805171 |
T |
|
| Q |
527 |
ttggggtaagtgaaatcgaaattcaaactttattacttatgataaagatcaaggtgattagaattgccatggtttaaaaaagtttcgatattatttttct |
626 |
Q |
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| T |
33805170 |
ttggggtaagtgaaatcgaaattcaaactttattacttatgataaagatcaaggtgattagaattgccatggtttaaaaaagtttcgatattatttttct |
33805071 |
T |
|
| Q |
627 |
aaattggggatggagaatannnnnnnnaaggggaaatggaaaacattttaattaattaaagttgcactaattactaatttacaattgtctttgagagaat |
726 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33805070 |
aaattggggatggagaattttttttttaaggggaaatggaaaacattttaattaattaaagttgcactaattactaatttacaattgtctttgagagaat |
33804971 |
T |
|
| Q |
727 |
ttaaactttgtattttgtggttacaagtttaacct |
761 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
33804970 |
ttaaactttgtattttgtggttacaagtttaacct |
33804936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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