View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20070_high_27 (Length: 248)
Name: NF20070_high_27
Description: NF20070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20070_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 98 - 225
Target Start/End: Original strand, 23517091 - 23517218
Alignment:
| Q |
98 |
catattgaaacaatttctttttcttttcttacttaaattaaaacaagtaaattcaaacctatcaatagttagataattagaagttagaaccaggcaaaag |
197 |
Q |
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| T |
23517091 |
catattgaaacaatttctttttcttttcttacttaaattaaaacaagtaaattcaaacctaccaatagttagataattagaagttagaaccaggcaaaag |
23517190 |
T |
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| Q |
198 |
aatttgagagaagtacttattatttttt |
225 |
Q |
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| T |
23517191 |
aatttgagagaagtacttattatttttt |
23517218 |
T |
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Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 23517029 - 23517087
Alignment:
| Q |
5 |
gaatttatcatcgtatcttgatcatatagtttgatcaagaaatcgaaatctagaaagaa |
63 |
Q |
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| T |
23517029 |
gaatttatcatcgtatcttgatcatatagtttgatcaagaaatcgaaatctagaaagaa |
23517087 |
T |
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