View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20070_high_4 (Length: 716)
Name: NF20070_high_4
Description: NF20070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20070_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 58 - 669
Target Start/End: Complemental strand, 33880989 - 33880400
Alignment:
| Q |
58 |
aaaattataaatcgtcatttggaaaaaacctccaaccgatacatgcaaagttaatattgatgttttgtttattccttctaatcgtagcactggggatgag |
157 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33880989 |
aaaattataaatcgtcatttggataaa-cctccaaccgatacatgcaaagttaatattgatgttttgtttattccttctaatcgtagcactggggat--- |
33880894 |
T |
|
| Q |
158 |
tttcgtaaatgattcaatacttccattccaaaattacttccatcaacgcgttaacaactgaaacatggtatgt--acattggaagtacaaaggatgaaaa |
255 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
33880893 |
-------------tcaatatttccattccaaaattacttccatcaacgcgttaacaactgaaacatggtatgtgtacattggaagtactaaggatgaaaa |
33880807 |
T |
|
| Q |
256 |
tgagtgaatagactttggatacaaaaactgcatatgaaccatgtgctatgaatcaagtggttagttagat--------taatgggtagtacctaagttct |
347 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33880806 |
tgagtgaataga--------------actgcctatgaaccatgtgctatgaatcaagtggttagttagatacttggattaatgggtagtacctaagttct |
33880721 |
T |
|
| Q |
348 |
tccatatattaacttgactttatttacctctccacttatcttcaaattactcaaactcgataaattnnnnnnntataaaataaacagcacatccttagtc |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
33880720 |
tccatatattaacttgactttatttacctctccacttatcttcaaattactcaaactcgataaataaaaaaaataaaaaataaacagcacatccttagtc |
33880621 |
T |
|
| Q |
448 |
tcttctaaaacttataagtgacacaatgttacaaacgcggatttttgtccacaaaatccaacaccctccgtttgtcataacgtaacagtgtaaattttac |
547 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
33880620 |
tcttctaaaacttataagtgacacaatgttacaaacgcggatttttgtccacaaaatccaacactctccgtttgtcataacgtaacagtgtaaattttac |
33880521 |
T |
|
| Q |
548 |
aagaatccaagttagctattttttattttaaatatttcgacaactaaataatatcacttcacatttaagttcgaatgtatgtaact---atgaacttcaa |
644 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| | | ||||||||||| |
|
|
| T |
33880520 |
aaggatccaagttagctattttttattttaaatatttcaacaac----taatatcacttcacatttaagttcgaatgtatgttaatatgatgaacttcaa |
33880425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 424 - 505
Target Start/End: Complemental strand, 33876080 - 33875999
Alignment:
| Q |
424 |
aaaataaacagcacatccttagtctcttctaaaacttataagtgacacaatgttacaaacgcggatttttgtccacaaaatc |
505 |
Q |
| |
|
|||| ||| ||||||||||||| |||||||||||||| |||||||||| ||| |||||| |||||| ||| |||||||| |
|
|
| T |
33876080 |
aaaaaaaatagcacatccttagcgtcttctaaaacttactagtgacacaaagttcaaaacgcagattttggtctacaaaatc |
33875999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 33881144 - 33881114
Alignment:
| Q |
18 |
gtttctacatggattgtggaaggaaagattt |
48 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
33881144 |
gtttctacatggattgtggaaggaaagattt |
33881114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University