View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20070_high_7 (Length: 560)
Name: NF20070_high_7
Description: NF20070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20070_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 240 - 543
Target Start/End: Original strand, 45540505 - 45540808
Alignment:
| Q |
240 |
ttcttcaactaatgttatttcaaatctcaattcaccaacatccacatatgaattgtcgcaagagagttcattcaatgagaaaacaaatacaaataacagt |
339 |
Q |
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| T |
45540505 |
ttcttcaactaatgttatttcaaatctcaattcaccaacatccacatatgaattgtcgcaagaaagttcattcaatgagaaaacaaatacaaataacagt |
45540604 |
T |
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| Q |
340 |
gactccgatgatgtagttaaatcatggcaaacccagccatctccatgtgatattgtatcaacaaatgttgaatcacatcacccctttaaagaaattgaga |
439 |
Q |
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| T |
45540605 |
gactccgatgatgtagttaaatcatggcaaacccagccatctccatgtgatattgtatcaacaaatgttgaatcacatcacccctttaaagaaattgaga |
45540704 |
T |
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| Q |
440 |
aaggacaacagggagtggatgatactatccatacggggacatcatcttttccaactttagaaccattaaaccaagaacaaacgtgcgcttctataaatgt |
539 |
Q |
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| T |
45540705 |
aaggacaacagggagtggatgatactatccatacagggacatcatcttttccaactttagaatcattaaaccaagaacaaacgtgcgcttctataaatgt |
45540804 |
T |
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| Q |
540 |
caca |
543 |
Q |
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|||| |
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| T |
45540805 |
caca |
45540808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 45540245 - 45540468
Alignment:
| Q |
19 |
gatttacgaactggtcatgctacaaatgcttatcaaccaccacctccgttaacagaacaagagcttgggagagcatctaacaatcctttggaagctcatt |
118 |
Q |
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| T |
45540245 |
gatttacgaactggtcatgccacaaatgcttatcaaccaccacctccgttaacagaacaagagcttgggagagcatctaacaatcctttggaagctcatt |
45540344 |
T |
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| Q |
119 |
ctcatataccagacatcaaccaagcctccgtgacatcattgtcgtcatcgttccaaaatccattcctaggaccaagtgaggcaaccaacgacactgttga |
218 |
Q |
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| T |
45540345 |
ctcatataccagacatcaaccaagcccccgtgacatcattgtcgtcatcgttccaaaatccattcataggaccaagtgaggcaaccaacgacactgttga |
45540444 |
T |
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| Q |
219 |
ggatgacacaaacattggtagttc |
242 |
Q |
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| T |
45540445 |
ggatgacacaaacattggtagttc |
45540468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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