View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20070_low_1 (Length: 790)
Name: NF20070_low_1
Description: NF20070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20070_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 707; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 707; E-Value: 0
Query Start/End: Original strand, 13 - 771
Target Start/End: Complemental strand, 31882564 - 31881806
Alignment:
| Q |
13 |
aaaatcaacagatattgcttgtttatcgcttttcaatcttgcaaattgtctcaaaaccgatagaagcgaaccctttccaaaagacttattaatgcttgca |
112 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31882564 |
aaaaccaacagatattgcttgtttatcgcttttcaatcttgcaaattgtctcaaaatcgatagaagcgaaccctttccaaaagacttattaatgcttgca |
31882465 |
T |
|
| Q |
113 |
tggaatgctagagttggatattcttttgacaaaaccctaagccatcctttagttgcccaagcaggaattagatcacacttgttcaacaaaagcaccatgt |
212 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31882464 |
tggaatgctagagttggatattcctttgacaaaaccctaagccatccttttgttgcccaagcaggaattagatcacacttgttcaacaaaagcaccatgt |
31882365 |
T |
|
| Q |
213 |
gtttgtgcttgcagttttctttcaaatgcttctctaaatggtaacatcttgtaccttgtggatcccttgcatctataacctgcacaacaacatctgaaga |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31882364 |
gtttgtgcttgcagttttctttcaaatgcttctctaaatggtaacatcttgtaccttgtggatcccttgcatctataacctgcacaacaacatctgaaga |
31882265 |
T |
|
| Q |
313 |
atctatcaccttgtagagctcaccccatatgcgtttgctttgacccttttcaaacatggtatgtcgcactaaatctctaaatccatcatcagcttcattg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31882264 |
atctatcaccttgtagagctcaccccatatgcgtttgctttgacccttttcaaacatggtatgtcgcactaaatctctaaatccatcatcagcttcattg |
31882165 |
T |
|
| Q |
413 |
ccatcttcaaaagcatcttgagaaacatcagcttttttagctaaagactcataatcagaagccaaaaggcttggacgttttcttttagtcttaggtccaa |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31882164 |
ccatcttcaaaagcatcttgagaaacatcagcttttttagctaaagactcataatcagaagccaaaaggcttggacgttttcttttagtcttaggtccaa |
31882065 |
T |
|
| Q |
513 |
acgcatgcagaaaaggctctctatcaagaaggtgaaccctggattgcttctggtaatcattgagaagcgacatgggcaaattcttacccttgatgataac |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||| | ||| |
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| T |
31882064 |
acgcatgcagaaaaggctctctatcaagaaggtgaaccctagattgcttctggtaatcattgagaagcgacatgggcaaattcttcccattgataacaac |
31881965 |
T |
|
| Q |
613 |
attataattactggaaccatgcttcgccatttcttctctaaaaaactcaagctctttctgattcacaacacgagtattcccgaaccaatgactatcgggt |
712 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31881964 |
attataattactggaaccatgcttcgccatttcttctctaaaaaactcgagctctttctgattcacaacacgagtattcccgaaccattgactatcgggt |
31881865 |
T |
|
| Q |
713 |
ttgattctcgtggatggaaggtttgggagttgaaaccgctcgtataagacacggccctt |
771 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
31881864 |
ttgattctcgtggatggaaggtatgggagttgaaacggctcgtataagacacggccctt |
31881806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 84 - 175
Target Start/End: Complemental strand, 43154457 - 43154366
Alignment:
| Q |
84 |
cctttccaaaagacttattaatgcttgcatggaatgctagagttggatattcttttgacaaaaccctaagccatcctttagttgcccaagca |
175 |
Q |
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||||| |||| |||||||| |||||||||||||||||||| |||| ||||||||||||||||| |||| ||||||| |||||||||||| |
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| T |
43154457 |
cctttacaaaggacttatttatgcttgcatggaatgctagtgttgaatattcttttgacaaaagtctaatatatccttttgttgcccaagca |
43154366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 3e-47; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 190 - 294
Target Start/End: Original strand, 33480017 - 33480121
Alignment:
| Q |
190 |
cttgttcaacaaaagcaccatgtgtttgtgcttgcagttttctttcaaatgcttctctaaatggtaacatcttgtaccttgtggatcccttgcatctata |
289 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33480017 |
cttgttcaataaaagcaccatgtgtttgtgcttgcagttttctttcaaatgcttctctaaatggtaacatcttgtgccttgtggatcccttgcatctata |
33480116 |
T |
|
| Q |
290 |
acctg |
294 |
Q |
| |
|
||||| |
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|
| T |
33480117 |
acctg |
33480121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 290 - 399
Target Start/End: Original strand, 33480546 - 33480655
Alignment:
| Q |
290 |
acctgcacaacaacatctgaagaatctatcaccttgtagagctcaccccatatgcgtttgctttgacccttttcaaacatggtatgtcgcactaaatctc |
389 |
Q |
| |
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||||| |||||||||||||||||||||||||| ||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33480546 |
acctggacaacaacatctgaagaatctatcactttgtaaagttcaccccatatacgtttgctttgacccttttcaaacatggtatgtcgcactaaatctc |
33480645 |
T |
|
| Q |
390 |
taaatccatc |
399 |
Q |
| |
|
|||||||||| |
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| T |
33480646 |
taaatccatc |
33480655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 429 - 560
Target Start/End: Original strand, 33481332 - 33481463
Alignment:
| Q |
429 |
cttgagaaacatcagcttttttagctaaagactcataatcagaagccaaaaggcttggacgttttcttttagtcttaggtccaaacgcatgcagaaaagg |
528 |
Q |
| |
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|||||||| |||| ||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||| | |||||| |
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| T |
33481332 |
cttgagaaccatcggctttcttagctaaagactcataatcagaagccaaaagacttggacgctttcttttagtcttaggtccaaatgcatccgaaaaagg |
33481431 |
T |
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| Q |
529 |
ctctctatcaagaaggtgaaccctggattgct |
560 |
Q |
| |
|
||||||||||||||| |||||||| ||||||| |
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| T |
33481432 |
ctctctatcaagaagatgaaccctcgattgct |
33481463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 84 - 191
Target Start/End: Original strand, 33479805 - 33479912
Alignment:
| Q |
84 |
cctttccaaaagacttattaatgcttgcatggaatgctagagttggatattcttttgacaaaaccctaagccatcctttagttgcccaagcaggaattag |
183 |
Q |
| |
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|||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
33479805 |
cctttccaaaggacttattaatacttgcatggaatgctagcgttggatattcttttgacaaaactctaagccatccttttgttgcccaagcaggaattag |
33479904 |
T |
|
| Q |
184 |
atcacact |
191 |
Q |
| |
|
||| |||| |
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|
| T |
33479905 |
atcgcact |
33479912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 559 - 693
Target Start/End: Original strand, 33481552 - 33481686
Alignment:
| Q |
559 |
cttctggtaatcattgagaagcgacatgggcaaattcttacccttgatgataacattataattactggaaccatgcttcgccatttcttctctaaaaaac |
658 |
Q |
| |
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|||||| |||||||||||||| ||||| ||||||||||| ||||| | |||| ||| |||||||| | || ||||||||||||||||||||| |||||| |
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| T |
33481552 |
cttctgataatcattgagaagtgacataggcaaattcttccccttaagaataatattgtaattacttgcactatgcttcgccatttcttctctgaaaaac |
33481651 |
T |
|
| Q |
659 |
tcaagctctttctgattcacaacacgagtattccc |
693 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
33481652 |
tcaagctctttctgattcacaacacgagtattccc |
33481686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 33479565 - 33479633
Alignment:
| Q |
18 |
caacagatattgcttgtttatcgcttttcaatcttgcaaattgtctcaaaaccgatagaagcgaaccct |
86 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
33479565 |
caacagatattgcttgcttatcacttttcaatcttgcaaattgtctcagaaccgatagaagtgaaccct |
33479633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 582 - 692
Target Start/End: Complemental strand, 2772790 - 2772680
Alignment:
| Q |
582 |
acatgggcaaattcttacccttgatgataacattataattactggaaccatgcttcgccatttcttctctaaaaaactcaagctctttctgattcacaac |
681 |
Q |
| |
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|||| ||||||||||| |||||||| ||||||||||||||| | || | ||| ||| ||||||||||||| ||||||||||| | || ||||| |||||| |
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| T |
2772790 |
acatcggcaaattcttccccttgataataacattataattatttgacctatgtttctccatttcttctctcaaaaactcaagtttttcctgatccacaac |
2772691 |
T |
|
| Q |
682 |
acgagtattcc |
692 |
Q |
| |
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||||||||||| |
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|
| T |
2772690 |
acgagtattcc |
2772680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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