View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20070_low_10 (Length: 499)

Name: NF20070_low_10
Description: NF20070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20070_low_10
NF20070_low_10
[»] chr8 (10 HSPs)
chr8 (133-293)||(10708436-10708593)
chr8 (131-294)||(21145492-21145652)
chr8 (103-164)||(3093935-3093996)
chr8 (244-289)||(26018687-26018732)
chr8 (242-292)||(16338265-16338315)
chr8 (103-165)||(29911559-29911621)
chr8 (243-288)||(2987008-2987053)
chr8 (245-286)||(42659934-42659975)
chr8 (244-288)||(21600531-21600575)
chr8 (242-294)||(30459954-30460006)
[»] chr2 (4 HSPs)
chr2 (238-294)||(39002941-39002997)
chr2 (103-165)||(29926871-29926933)
chr2 (245-292)||(7165689-7165736)
chr2 (243-292)||(6788345-6788394)
[»] chr1 (8 HSPs)
chr1 (242-293)||(5043426-5043477)
chr1 (218-289)||(6541132-6541204)
chr1 (244-292)||(27463840-27463888)
chr1 (135-294)||(34826889-34827045)
chr1 (235-287)||(32743254-32743306)
chr1 (108-165)||(3728097-3728154)
chr1 (99-164)||(41730128-41730193)
chr1 (103-151)||(46500792-46500840)
[»] chr3 (7 HSPs)
chr3 (242-289)||(34979107-34979154)
chr3 (103-165)||(43838806-43838868)
chr3 (103-288)||(3941674-3941856)
chr3 (242-288)||(35118694-35118740)
chr3 (344-414)||(36080823-36080893)
chr3 (132-165)||(33756703-33756736)
chr3 (237-289)||(23195648-23195700)
[»] chr6 (7 HSPs)
chr6 (245-292)||(26293485-26293532)
chr6 (237-287)||(16431583-16431633)
chr6 (237-292)||(10067646-10067702)
chr6 (127-165)||(8161450-8161488)
chr6 (228-293)||(24285099-24285165)
chr6 (451-479)||(10668291-10668319)
chr6 (102-150)||(29619614-29619662)
[»] chr5 (7 HSPs)
chr5 (102-165)||(9572682-9572744)
chr5 (103-156)||(6217635-6217688)
chr5 (99-165)||(7756655-7756721)
chr5 (341-414)||(6217380-6217453)
chr5 (99-164)||(7756959-7757024)
chr5 (136-165)||(9572514-9572543)
chr5 (184-266)||(27001267-27001346)
[»] chr4 (15 HSPs)
chr4 (103-199)||(46217157-46217253)
chr4 (344-414)||(6364962-6365032)
chr4 (103-164)||(51234447-51234508)
chr4 (244-288)||(7616900-7616944)
chr4 (237-289)||(11839896-11839948)
chr4 (102-165)||(9297411-9297474)
chr4 (245-292)||(13834452-13834499)
chr4 (218-288)||(48973309-48973380)
chr4 (99-165)||(24806713-24806778)
chr4 (220-289)||(29116293-29116363)
chr4 (132-165)||(5979423-5979456)
chr4 (228-292)||(9297476-9297541)
chr4 (132-165)||(11358538-11358571)
chr4 (107-163)||(35576221-35576277)
chr4 (245-293)||(51150964-51151012)
[»] chr7 (8 HSPs)
chr7 (209-294)||(10228823-10228909)
chr7 (231-267)||(12849575-12849611)
chr7 (237-288)||(26905145-26905196)
chr7 (244-289)||(18942866-18942911)
chr7 (251-288)||(24325470-24325507)
chr7 (341-414)||(25618190-25618263)
chr7 (132-164)||(10228790-10228822)
chr7 (103-151)||(27233678-27233726)
[»] scaffold0050 (1 HSPs)
scaffold0050 (99-156)||(81554-81611)


Alignment Details
Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 133 - 293
Target Start/End: Original strand, 10708436 - 10708593
Alignment:
Q  133 tcgttagtcaaaatagtctttgacgttaaaatannnnnnnaatactggcattaactcttttcatatagagataaatatgatagtaaataagtacttattt 232  Q
    |||||||||||||||||||||||||||||||||       ||||| | ||||||| ||||| |||||| |||  ||||||| || |||||||||||||      
T  10708436 tcgttagtcaaaatagtctttgacgttaaaatagtttttcaataccgacattaaccctttttatatagggattgatatgattgttaataagtacttat-- 10708533  T
Q  233 ataagacttatatgacaataagtaagtatattgaatgaccaatataataatattaacaaaa 293  Q
      | |||  || ||| ||||| ||||||||||||   || |||||||||||||||||||||    
T  10708534 -aatgaccgatgtgataataattaagtatattgaggaactaatataataatattaacaaaa 10708593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 131 - 294
Target Start/End: Complemental strand, 21145652 - 21145492
Alignment:
Q  131 tttcgttagtcaaaatagtctttgacgttaaaatannnnnnnaatactggcattaactcttttcatatagagataaatatgatagtaaataagtacttat 230  Q
    ||||||||||||||||||||| ||| |||||||||       ||| ||| ||||||||||||| |||||| ||   ||| || ||| | |||||||||||    
T  21145652 tttcgttagtcaaaatagtctctgatgttaaaatagtccctcaatgctgacattaactctttttatatagggactgataggacagtgagtaagtacttat 21145553  T
Q  231 ttataagacttatatgacaataagtaagtatattgaatgaccaatataataatattaacaaaac 294  Q
        | |||| |||||||| ||||||||||||||||  ||| ||||| ||||||||||| ||||    
T  21145552 a---aggactgatatgacagtaagtaagtatattgagagactaatatgataatattaacgaaac 21145492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 103 - 164
Target Start/End: Complemental strand, 3093996 - 3093935
Alignment:
Q  103 aaattttaaaatagtccataattatatatttcgttagtcaaaatagtctttgacgttaaaat 164  Q
    ||||||||||||||||  ||||| |||||| |||||||||||||| ||||| || |||||||    
T  3093996 aaattttaaaatagtctttaattttatattacgttagtcaaaataatctttaacattaaaat 3093935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 26018687 - 26018732
Alignment:
Q  244 atgacaataagtaagtatattgaatgaccaatataataatattaac 289  Q
    |||||||||||||||||||||||||||| ||||||| ||| |||||    
T  26018687 atgacaataagtaagtatattgaatgactaatataacaatgttaac 26018732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 292
Target Start/End: Original strand, 16338265 - 16338315
Alignment:
Q  242 atatgacaataagtaagtatattgaatgaccaatataataatattaacaaa 292  Q
    |||||||||||||||||||||||||  ||| ||||| | ||||||||||||    
T  16338265 atatgacaataagtaagtatattgatggacaaatatgacaatattaacaaa 16338315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 165
Target Start/End: Complemental strand, 29911621 - 29911559
Alignment:
Q  103 aaattttaaaatagtccataattatatatttcgttagtcaaaatagtctttgacgttaaaata 165  Q
    ||||||||||||||| ||||| | |  | |||||||||||||||||||| | |||||||||||    
T  29911621 aaattttaaaatagttcataagtgtccacttcgttagtcaaaatagtctctaacgttaaaata 29911559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 288
Target Start/End: Complemental strand, 2987053 - 2987008
Alignment:
Q  243 tatgacaataagtaagtatattgaatgaccaatataataatattaa 288  Q
    ||||||||||||||||||||||||| ||| ||||| ||| ||||||    
T  2987053 tatgacaataagtaagtatattgaaagactaatatgatagtattaa 2987008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 286
Target Start/End: Complemental strand, 42659975 - 42659934
Alignment:
Q  245 tgacaataagtaagtatattgaatgaccaatataataatatt 286  Q
    ||||||||||||||||||||||||||| ||||| | ||||||    
T  42659975 tgacaataagtaagtatattgaatgactaatatgacaatatt 42659934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 21600575 - 21600531
Alignment:
Q  244 atgacaataagtaagtatattgaatgaccaatataataatattaa 288  Q
    |||||||||||||||||||||||| ||| ||||| | ||||||||    
T  21600575 atgacaataagtaagtatattgaaggacaaatatgacaatattaa 21600531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 30460006 - 30459954
Alignment:
Q  242 atatgacaataagtaagtatattgaatgaccaatataataatattaacaaaac 294  Q
    |||||||||||||||||||||||||  ||| ||||| | |||||||| |||||    
T  30460006 atatgacaataagtaagtatattgagggacaaatattaaaatattaagaaaac 30459954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 238 - 294
Target Start/End: Complemental strand, 39002997 - 39002941
Alignment:
Q  238 acttatatgacaataagtaagtatattgaatgaccaatataataatattaacaaaac 294  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||    
T  39002997 acttatatgacaataagtaagtatattgaatgactaatataataattttaacgaaac 39002941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 103 - 165
Target Start/End: Complemental strand, 29926933 - 29926871
Alignment:
Q  103 aaattttaaaatagtccataattatatatttcgttagtcaaaatagtctttgacgttaaaata 165  Q
    |||||||||||||||| || ||| |  ||||| ||||||||||||||||||||||||||||||    
T  29926933 aaattttaaaatagtcaatgattgtgcatttcattagtcaaaatagtctttgacgttaaaata 29926871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 292
Target Start/End: Complemental strand, 7165736 - 7165689
Alignment:
Q  245 tgacaataagtaagtatattgaatgaccaatataataatattaacaaa 292  Q
    ||||||||||||||||||||||| ||| ||||| | ||||||||||||    
T  7165736 tgacaataagtaagtatattgaaagactaatatgaaaatattaacaaa 7165689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 292
Target Start/End: Complemental strand, 6788394 - 6788345
Alignment:
Q  243 tatgacaataagtaagtatattgaatgaccaatataataatattaacaaa 292  Q
    ||||| ||||||||||||||||||||||| | ||| | ||||||||||||    
T  6788394 tatgataataagtaagtatattgaatgactagtatgacaatattaacaaa 6788345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 5043426 - 5043477
Alignment:
Q  242 atatgacaataagtaagtatattgaatgaccaatataataatattaacaaaa 293  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  5043426 atatgacaataaataagtatattgaatgaccaatataacaatattaacaaaa 5043477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 218 - 289
Target Start/End: Complemental strand, 6541204 - 6541132
Alignment:
Q  218 aataagtacttatttataa-gacttatatgacaataagtaagtatattgaatgaccaatataataatattaac 289  Q
    ||||||||  ||||||||| |||| |||||||||||||||||||||||||| ||| ||||| | |||||||||    
T  6541204 aataagtaagtatttataaagactgatatgacaataagtaagtatattgaaggactaatatgacaatattaac 6541132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 27463840 - 27463888
Alignment:
Q  244 atgacaataagtaagtatattgaatgaccaatataataatattaacaaa 292  Q
    |||||||||||||||||||||||| ||| ||||||| ||||||||||||    
T  27463840 atgacaataagtaagtatattgaaagactaatataacaatattaacaaa 27463888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 294
Target Start/End: Original strand, 34826889 - 34827045
Alignment:
Q  135 gttagtcaaaatagtctttgacgttaaaatannnnnnnaatactggcattaactcttttcatatagagataaatatgatagtaaataagtacttatttat 234  Q
    |||||||||||||||||||||||||||||||       ||| ||  || ||||| |||||||||||  |   | |||| | ||| |||||||||||        
T  34826889 gttagtcaaaatagtctttgacgttaaaataatctcttaatgctcacaataacttttttcatataggaaccgaaatgacaataagtaagtacttat---- 34826984  T
Q  235 aag-acttatatgacaataagtaagtatattgaatgaccaatataataatattaacaaaac 294  Q
    ||| ||| |||||||||||| ||||||||||||||||| ||||| | ||||||||| ||||    
T  34826985 aagtactgatatgacaataaataagtatattgaatgactaatatgacaatattaacgaaac 34827045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 32743254 - 32743306
Alignment:
Q  235 aagacttatatgacaataagtaagtatattgaatgaccaatataataatatta 287  Q
    |||||| |||||||| ||||||||||||||||||||  ||||||| |||||||    
T  32743254 aagactgatatgacagtaagtaagtatattgaatgattaatataagaatatta 32743306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 3728097 - 3728154
Alignment:
Q  108 ttaaaatagtccataattatatatttcgttagtcaaaatagtctttgacgttaaaata 165  Q
    |||||||||||||| ||| | ||||  ||||||||||||||||| | |||||||||||    
T  3728097 ttaaaatagtccatgattgtgtattatgttagtcaaaatagtctcttacgttaaaata 3728154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 164
Target Start/End: Complemental strand, 41730193 - 41730128
Alignment:
Q  99 attgaaattttaaaatagtccataattatatatttcgttagtcaaaatagtctttgacgttaaaat 164  Q
    |||||||||||||||||||   |||||||  ||||||||||| || ||||||||| | ||||||||    
T  41730193 attgaaattttaaaatagtgtttaattatgcatttcgttagttaagatagtctttaaagttaaaat 41730128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 46500840 - 46500792
Alignment:
Q  103 aaattttaaaatagtccataattatatatttcgttagtcaaaatagtct 151  Q
    ||||||||||||||| ||||||||| || || ||||||||| |||||||    
T  46500840 aaattttaaaatagttcataattatgtactttgttagtcaatatagtct 46500792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 242 - 289
Target Start/End: Original strand, 34979107 - 34979154
Alignment:
Q  242 atatgacaataagtaagtatattgaatgaccaatataataatattaac 289  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||    
T  34979107 atatgacaataagtaagtatattgaatgactaatatgataatattaac 34979154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 165
Target Start/End: Complemental strand, 43838868 - 43838806
Alignment:
Q  103 aaattttaaaatagtccataattatatatttcgttagtcaaaatagtctttgacgttaaaata 165  Q
    ||||||||||||||||  | ||| |  |||| |||||||||||||||||||||||||||||||    
T  43838868 aaattttaaaatagtcattgattgtgcattttgttagtcaaaatagtctttgacgttaaaata 43838806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 103 - 288
Target Start/End: Complemental strand, 3941856 - 3941674
Alignment:
Q  103 aaattttaaaatagtccataattatatatttcgttagtcaaaatagtctttgacgttaaaatannnnnnnaatactggcattaactcttttcatatagag 202  Q
    ||||||||||||||||| |||||  | |||| ||||||||||||||||| | || || |||||       || |||  || |||||||||||||||| ||    
T  3941856 aaattttaaaatagtccttaattgaacattttgttagtcaaaatagtctctaacattgaaataatctctcaacactcacaataactcttttcatataaag 3941757  T
Q  203 ataaatatgatagtaaataagtacttatttataagacttatatgacaataagtaagtatattgaatgaccaatataataatattaa 288  Q
    |  || |||||| ||| ||||||  ||| || | |||| |||||| |||||||| |||||||||| ||| ||||| | ||||||||    
T  3941756 actaacatgataataagtaagta--tatata-acgactgatatgataataagtaggtatattgaaggactaatatgacaatattaa 3941674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 288
Target Start/End: Original strand, 35118694 - 35118740
Alignment:
Q  242 atatgacaataagtaagtatattgaatgaccaatataataatattaa 288  Q
    ||||| |||||||||||||||||||||||  ||||||||| ||||||    
T  35118694 atatgtcaataagtaagtatattgaatgaataatataatagtattaa 35118740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 414
Target Start/End: Original strand, 36080823 - 36080893
Alignment:
Q  344 tttaaaattttgatacattaaataattactgtgactaatatttacacattcataaatcaaaatgattatta 414  Q
    |||||||||||||||||||||| || || |||||||||   ||||||||| |  ||||||||||| |||||    
T  36080823 tttaaaattttgatacattaaaaaactattgtgactaaccattacacattgaggaatcaaaatgactatta 36080893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 165
Target Start/End: Original strand, 33756703 - 33756736
Alignment:
Q  132 ttcgttagtcaaaatagtctttgacgttaaaata 165  Q
    |||| |||||||||||||||||||||||||||||    
T  33756703 ttcgatagtcaaaatagtctttgacgttaaaata 33756736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 289
Target Start/End: Original strand, 23195648 - 23195700
Alignment:
Q  237 gacttatatgacaataagtaagtatattgaatgaccaatataataatattaac 289  Q
    |||| |||||||||||| ||||||||||||| ||| ||||| | |||||||||    
T  23195648 gactgatatgacaataattaagtatattgaaagactaatatgacaatattaac 23195700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 245 - 292
Target Start/End: Original strand, 26293485 - 26293532
Alignment:
Q  245 tgacaataagtaagtatattgaatgaccaatataataatattaacaaa 292  Q
    |||||||||||| |||||||||||||| ||||| ||||||||||||||    
T  26293485 tgacaataagtatgtatattgaatgactaatatgataatattaacaaa 26293532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 16431583 - 16431633
Alignment:
Q  237 gacttatatgacaataagtaagtatattgaatgaccaatataataatatta 287  Q
    |||| |||||||||||||||||||||||||||||| ||||| | |||||||    
T  16431583 gactgatatgacaataagtaagtatattgaatgactaatatgacaatatta 16431633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 10067646 - 10067702
Alignment:
Q  237 gacttatatgacaa-taagtaagtatattgaatgaccaatataataatattaacaaa 292  Q
    |||| ||||||||| ||||||||||||||||||||| ||||| | ||||||||||||    
T  10067646 gactgatatgacaaataagtaagtatattgaatgactaatatgacaatattaacaaa 10067702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 165
Target Start/End: Complemental strand, 8161488 - 8161450
Alignment:
Q  127 tatatttcgttagtcaaaatagtctttgacgttaaaata 165  Q
    ||||||| ||||||||||||||| |||||||||||||||    
T  8161488 tatattttgttagtcaaaatagtttttgacgttaaaata 8161450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 293
Target Start/End: Complemental strand, 24285165 - 24285099
Alignment:
Q  228 tatttataag-acttatatgacaataagtaagtatattgaatgaccaatataataatattaacaaaa 293  Q
    |||||||||| ||| |||||| |||||||||||||||| |||||  ||||| | |||||||||||||    
T  24285165 tatttataaggactgatatgataataagtaagtatattaaatgattaatatgacaatattaacaaaa 24285099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 451 - 479
Target Start/End: Original strand, 10668291 - 10668319
Alignment:
Q  451 tttcaactgttcattgcattcaaaagagg 479  Q
    |||||||||||||||||||||||||||||    
T  10668291 tttcaactgttcattgcattcaaaagagg 10668319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 29619662 - 29619614
Alignment:
Q  102 gaaattttaaaatagtccataattatatatttcgttagtcaaaatagtc 150  Q
    |||||| ||||||||||||| ||| || | |||||||||||||||||||    
T  29619662 gaaattataaaatagtccatgattgtaaacttcgttagtcaaaatagtc 29619614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 102 - 165
Target Start/End: Complemental strand, 9572744 - 9572682
Alignment:
Q  102 gaaattttaaaatagtccataattatatatttcgttagtcaaaatagtctttgacgttaaaata 165  Q
    |||||||||||||||||  | ||| |||||| ||||||||||| ||||||||||||||||||||    
T  9572744 gaaattttaaaatagtcatttattgtatattacgttagtcaaa-tagtctttgacgttaaaata 9572682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 103 - 156
Target Start/End: Complemental strand, 6217688 - 6217635
Alignment:
Q  103 aaattttaaaatagtccataattatatatttcgttagtcaaaatagtctttgac 156  Q
    |||||| |||||||||||| |||||  | |||||||||||||||||||||||||    
T  6217688 aaatttcaaaatagtccatgattatgcacttcgttagtcaaaatagtctttgac 6217635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 165
Target Start/End: Complemental strand, 7756721 - 7756655
Alignment:
Q  99 attgaaattttaaaatagtccataattatatatttcgttagtcaaaatagtctttgacgttaaaata 165  Q
    |||||||||| ||||||||| || ||| || | |||||||||||||||||||| |  ||||||||||    
T  7756721 attgaaatttcaaaatagtcaatgattgtacaattcgttagtcaaaatagtctctcgcgttaaaata 7756655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 414
Target Start/End: Complemental strand, 6217453 - 6217380
Alignment:
Q  341 tattttaaaattttgatacattaaataattactgtgactaatatttacacattcataaatcaaaatgattatta 414  Q
    |||||||||||||||||||||||| | | || ||| |||| | |||||| ||||| |||||||| ||| |||||    
T  6217453 tattttaaaattttgatacattaagtgactattgtaactactttttacatattcaaaaatcaaattgactatta 6217380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 164
Target Start/End: Original strand, 7756959 - 7757024
Alignment:
Q  99 attgaaattttaaaatagtccataattatatatttcgttagtcaaaatagtctttgacgttaaaat 164  Q
    ||||||||||||||||||||| ||||  |  |||| ||||||||||||||||| | || |||||||    
T  7756959 attgaaattttaaaatagtccttaatcgttgattttgttagtcaaaatagtctctaacattaaaat 7757024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 165
Target Start/End: Original strand, 9572514 - 9572543
Alignment:
Q  136 ttagtcaaaatagtctttgacgttaaaata 165  Q
    ||||||||||||||||||||||||||||||    
T  9572514 ttagtcaaaatagtctttgacgttaaaata 9572543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 266
Target Start/End: Complemental strand, 27001346 - 27001267
Alignment:
Q  184 taactcttttcatatagagataaatatgatagtaaataagtacttatttataagacttatatgacaataagtaagtatattga 266  Q
    ||||||||||||||||  ||| || |||| | ||| |||||| ||||    |||||| |||||||||||||||||||||||||    
T  27001346 taactcttttcatataaggattaaaatgacaataattaagtatttata---aagactgatatgacaataagtaagtatattga 27001267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 103 - 199
Target Start/End: Complemental strand, 46217253 - 46217157
Alignment:
Q  103 aaattttaaaatagtccataattatatatttcgttagtcaaaatagtctttgacgttaaaatannnnnnnaatactggcattaactcttttcatata 199  Q
    ||||| ||||||||||  | ||| | ||||||||||||||||||||||||| |||| ||||||       ||| ||| |||||||||||||||||||    
T  46217253 aaattataaaatagtcattgattgtgtatttcgttagtcaaaatagtctttaacgtcaaaataatctctcaatgctgacattaactcttttcatata 46217157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 414
Target Start/End: Original strand, 6364962 - 6365032
Alignment:
Q  344 tttaaaattttgatacattaaataattactgtgactaatatttacacattcataaatcaaaatgattatta 414  Q
    |||||||||||| |||||||||  |||| |||||||| || ||||||||||| | || |||||||||||||    
T  6364962 tttaaaattttgttacattaaaagattattgtgactactagttacacattcaaagattaaaatgattatta 6365032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 103 - 164
Target Start/End: Complemental strand, 51234508 - 51234447
Alignment:
Q  103 aaattttaaaatagtccataattatatatttcgttagtcaaaatagtctttgacgttaaaat 164  Q
    ||||||||||||||||  ||| |||  |||||||||||||||||||||| ||| ||||||||    
T  51234508 aaattttaaaatagtctctaactatgcatttcgttagtcaaaatagtctctgatgttaaaat 51234447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 7616944 - 7616900
Alignment:
Q  244 atgacaataagtaagtatattgaatgaccaatataataatattaa 288  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||||    
T  7616944 atgacaataaataagtatattgaatgactaatatgataatattaa 7616900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 289
Target Start/End: Complemental strand, 11839948 - 11839896
Alignment:
Q  237 gacttatatgacaataagtaagtatattgaatgaccaatataataatattaac 289  Q
    ||||||||||||||||||||||| ||||||| ||| ||||| | |||||||||    
T  11839948 gacttatatgacaataagtaagtgtattgaaggactaatatgacaatattaac 11839896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 165
Target Start/End: Original strand, 9297411 - 9297474
Alignment:
Q  102 gaaattttaaaatagtccataattatatatttcgttagtcaaaatagtctttgacgttaaaata 165  Q
    |||||||||||||||||||| ||| |||| || |||||||||||| ||  ||||| ||||||||    
T  9297411 gaaattttaaaatagtccatgattttatactttgttagtcaaaattgttattgacattaaaata 9297474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 292
Target Start/End: Complemental strand, 13834499 - 13834452
Alignment:
Q  245 tgacaataagtaagtatattgaatgaccaatataataatattaacaaa 292  Q
    ||||||||||||||||||||||| ||| ||||| | ||||||||||||    
T  13834499 tgacaataagtaagtatattgaaggactaatatgacaatattaacaaa 13834452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 288
Target Start/End: Original strand, 48973309 - 48973380
Alignment:
Q  218 aataagtacttatttataag-acttatatgacaataagtaagtatattgaatgaccaatataataatattaa 288  Q
    ||||||||  |||||||||| ||  |||||||||||||||||||||||||| ||| ||||| | ||||||||    
T  48973309 aataagtaagtatttataaggaccgatatgacaataagtaagtatattgaaggactaatatgacaatattaa 48973380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 165
Target Start/End: Complemental strand, 24806778 - 24806713
Alignment:
Q  99 attgaaattttaaaatagtccataattatatatttcgttagtcaaaatagtctttgacgttaaaata 165  Q
    |||||||||| |||||||||| || |||| |||||| |||||||||||||||| | || ||||||||    
T  24806778 attgaaatttgaaaatagtcctta-ttatgtatttcattagtcaaaatagtctctaacattaaaata 24806713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 29116293 - 29116363
Alignment:
Q  220 taagtacttatttataag-acttatatgacaataagtaagtatattgaatgaccaatataataatattaac 289  Q
    |||||| ||||||||||| ||| |||||||||||| ||| |||||||||||||  ||||  ||||||||||    
T  29116293 taagtaattatttataaggactaatatgacaataaataaatatattgaatgacttatatgttaatattaac 29116363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 165
Target Start/End: Original strand, 5979423 - 5979456
Alignment:
Q  132 ttcgttagtcaaaatagtctttgacgttaaaata 165  Q
    |||||||||||||||||||| |||||||||||||    
T  5979423 ttcgttagtcaaaatagtctctgacgttaaaata 5979456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 292
Target Start/End: Complemental strand, 9297541 - 9297476
Alignment:
Q  228 tatttataag-acttatatgacaataagtaagtatattgaatgaccaatataataatattaacaaa 292  Q
    |||||||||| ||| |||||| ||||| |||||||||| |||||| ||||| | ||||||||||||    
T  9297541 tatttataaggactgatatgataataaataagtatatttaatgactaatatgacaatattaacaaa 9297476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 165
Target Start/End: Original strand, 11358538 - 11358571
Alignment:
Q  132 ttcgttagtcaaaatagtctttgacgttaaaata 165  Q
    |||||||||||||||||||| |||||||||||||    
T  11358538 ttcgttagtcaaaatagtctctgacgttaaaata 11358571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 35576277 - 35576221
Alignment:
Q  107 tttaaaatagtccataattatatatttcgttagtcaaaatagtctttgacgttaaaa 163  Q
    ||||||||||||  ||||||| ||||  |||| |||||||||||||| |||||||||    
T  35576277 tttaaaatagtctttaattatgtattatgttaatcaaaatagtcttttacgttaaaa 35576221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 51151012 - 51150964
Alignment:
Q  245 tgacaataagtaagtatattgaatgaccaatataataatattaacaaaa 293  Q
    |||||||||||||||||||||||  || ||||| | |||||||||||||    
T  51151012 tgacaataagtaagtatattgaagtactaatatgacaatattaacaaaa 51150964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 294
Target Start/End: Complemental strand, 10228909 - 10228823
Alignment:
Q  209 atgatagtaaataagtacttatttataaga-cttatatgacaataagtaagtatattgaatgaccaatataataatattaacaaaac 294  Q
    |||||||||| ||| ||  ||||||||||| ||||||||||||||| ||||||||||||| ||| |||||   ||| ||||||||||    
T  10228909 atgatagtaagtaaataaatatttataagaacttatatgacaataattaagtatattgaaggactaatatgtaaattttaacaaaac 10228823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 12849611 - 12849575
Alignment:
Q  231 ttataagacttatatgacaataagtaagtatattgaa 267  Q
    ||||||||||||||| |||||||||||||||||||||    
T  12849611 ttataagacttatataacaataagtaagtatattgaa 12849575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 288
Target Start/End: Original strand, 26905145 - 26905196
Alignment:
Q  237 gacttatatgacaataagtaagtatattgaatgaccaatataataatattaa 288  Q
    |||| |||||||||||||||||||||||||| ||  ||||| ||||||||||    
T  26905145 gactaatatgacaataagtaagtatattgaaggaataatatgataatattaa 26905196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 18942911 - 18942866
Alignment:
Q  244 atgacaataagtaagtatattgaatgaccaatataataatattaac 289  Q
    |||||||||||||||||||||||||||  ||||| | |||||||||    
T  18942911 atgacaataagtaagtatattgaatgattaatatgacaatattaac 18942866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 288
Target Start/End: Complemental strand, 24325507 - 24325470
Alignment:
Q  251 taagtaagtatattgaatgaccaatataataatattaa 288  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  24325507 taagtaagtatattgaaggaccaatatgataatattaa 24325470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 414
Target Start/End: Original strand, 25618190 - 25618263
Alignment:
Q  341 tattttaaaattttgatacattaaataattactgtgactaatatttacacattcataaatcaaaatgattatta 414  Q
    |||||||||||||| |||||||  | || |||||||||||||  |||||||||||  || |||||| |||||||    
T  25618190 tattttaaaattttaatacattgcaaaactactgtgactaatcgttacacattcaagaaccaaaataattatta 25618263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 10228790 - 10228822
Alignment:
Q  132 ttcgttagtcaaaatagtctttgacgttaaaat 164  Q
    ||||||||||||||||||||||||| |||||||    
T  10228790 ttcgttagtcaaaatagtctttgaccttaaaat 10228822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 27233678 - 27233726
Alignment:
Q  103 aaattttaaaatagtccataattatatatttcgttagtcaaaatagtct 151  Q
    ||||| ||||||||||| |||||||| |||  |||||||||||||||||    
T  27233678 aaattataaaatagtccttaattatacattatgttagtcaaaatagtct 27233726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 99 - 156
Target Start/End: Complemental strand, 81611 - 81554
Alignment:
Q  99 attgaaattttaaaatagtccataattatatatttcgttagtcaaaatagtctttgac 156  Q
    |||||||||||||||||||||||||||||     |||||||||||||||||| |||||    
T  81611 attgaaattttaaaatagtccataattatgctcatcgttagtcaaaatagtccttgac 81554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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