View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20070_low_11 (Length: 478)
Name: NF20070_low_11
Description: NF20070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20070_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 23 - 468
Target Start/End: Complemental strand, 10590586 - 10590141
Alignment:
| Q |
23 |
ggaactcaaacatatatcccacaaagaaattttgtcccaacacaatacgtccaagtgcttataatttataaatatcaaccatttttgtttttgtgcaatc |
122 |
Q |
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| T |
10590586 |
ggaactcaaacatatatcccacaaagaaaatttgtcccaacacaatacgtccaagtgcttataatttataaatatcaaccatttttgttattgtgcaatc |
10590487 |
T |
|
| Q |
123 |
aaatctgctcccaccatgttccgttggaacttgctaaccatgcaatgcaattcatgaaaaacaagtggcactttatttgtttttcatgtcatgcacatgg |
222 |
Q |
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| T |
10590486 |
aaatctgctcccaccatgttccgttggaacttgctaaccatgcaacgcaattcatgaaaaacaagtggcactttatttgtttttcatgtcatgcacatgg |
10590387 |
T |
|
| Q |
223 |
ggcaaatttgtacatatcagaagctgtgactaataatagaaatgcaaaattatgtagcaaactatttccttcaaaaacacaaacattggatggatttggc |
322 |
Q |
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||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10590386 |
ggcaaatttgtacatatcagaagctatcactaataatagaaatgcaaaattatgtagcaaactatttccttcaaaaacacaaacattggatggatttggc |
10590287 |
T |
|
| Q |
323 |
catggcatgtggctcacaagcaccaattgttagaaattaaatcaagaaatggctagactagtgtcatagaagattgaattgctaccatttttatcattaa |
422 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
10590286 |
catggcaagtggctcacaagcaccaattgttagaaattaaatcaagaaatggctagactagtgttatagaagattgaattgctaccatttttatcattaa |
10590187 |
T |
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| Q |
423 |
gaaaatttattattgggccaaaataaagtagtaagaaccacctatg |
468 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10590186 |
gaaaatttattattgggccaaaataaagtagtaagaaccacctatg |
10590141 |
T |
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