View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20070_low_15 (Length: 406)
Name: NF20070_low_15
Description: NF20070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20070_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 39809177 - 39808784
Alignment:
| Q |
1 |
tcgctgcagccgccaccctttgctgctcttcaacggtggtagaagcgccaccaccggtggatagtatagcctcaaggtagccattaatccactcattacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39809177 |
tcgctgcagccgccaccctttgctgctcttcaacggtggtagaagcaccaccaccggtggatagtatagcctcaaggtagccattaatccactcattacc |
39809078 |
T |
|
| Q |
101 |
agccattaatctcaacctttctttgtattatatatgtaatgtaaaactactatacagtttacaatattcttaaactcaagtactcattctaatatgaagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39809077 |
agccattaatctcaacctttctttgtattatatatgtaatgtaaaactactatacagtttacaatattcttaaactcaagtactcattctaatatgaagt |
39808978 |
T |
|
| Q |
201 |
atgtttcttgaatgttacatgatcaacatggcttatctttatgtaatgttttgtgtgcagtgttagagaaccacatgcaatgaacgatgtatattgctca |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39808977 |
atgtttcttgaatgttacatgatcaacatggcttatctttatgtaatgttttgtgtgcagtgttagagaaccacatgcaatgaacgatgtatattgctca |
39808878 |
T |
|
| Q |
301 |
tttttggttcaaatttgtgtgttgtgtattgtattgtcttttgtgttagttagttaggcaccgaatataattaacattattccttattcttctc |
394 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39808877 |
tttttggttcaaatttgtgtgttgtgtattgtgttgtcttttgtgttagttagttaggcaccgaatataattaacattattccttattcttctc |
39808784 |
T |
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