View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20070_low_2 (Length: 789)

Name: NF20070_low_2
Description: NF20070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20070_low_2
NF20070_low_2
[»] chr3 (27 HSPs)
chr3 (34-134)||(54044140-54044240)
chr3 (571-683)||(36646301-36646413)
chr3 (611-694)||(24281075-24281158)
chr3 (611-679)||(2175808-2175876)
chr3 (642-694)||(3044249-3044301)
chr3 (614-690)||(39602172-39602248)
chr3 (611-694)||(14548680-14548763)
chr3 (611-690)||(37273166-37273245)
chr3 (583-694)||(43115084-43115195)
chr3 (573-672)||(50015936-50016035)
chr3 (636-690)||(5391911-5391965)
chr3 (584-694)||(27792900-27793010)
chr3 (636-694)||(47513681-47513739)
chr3 (571-628)||(51929835-51929892)
chr3 (630-694)||(3015821-3015885)
chr3 (646-694)||(25925770-25925818)
chr3 (571-694)||(41633388-41633509)
chr3 (636-692)||(42745068-42745124)
chr3 (611-694)||(2152137-2152220)
chr3 (449-484)||(11093708-11093743)
chr3 (571-670)||(44014717-44014816)
chr3 (571-690)||(45541603-45541722)
chr3 (612-654)||(25182947-25182989)
chr3 (573-694)||(20194954-20195074)
chr3 (617-694)||(21574518-21574595)
chr3 (571-648)||(32663712-32663789)
chr3 (571-652)||(50211805-50211886)
[»] chr8 (29 HSPs)
chr8 (562-694)||(9700029-9700161)
chr8 (571-694)||(7714270-7714393)
chr8 (571-694)||(26479813-26479936)
chr8 (571-694)||(8060697-8060819)
chr8 (576-694)||(6950350-6950468)
chr8 (587-692)||(13000359-13000464)
chr8 (614-694)||(30918141-30918220)
chr8 (611-694)||(778417-778500)
chr8 (591-686)||(11569396-11569491)
chr8 (636-690)||(11770995-11771049)
chr8 (583-689)||(30191072-30191178)
chr8 (636-688)||(32840969-32841022)
chr8 (571-683)||(2091802-2091914)
chr8 (584-652)||(7918713-7918781)
chr8 (614-694)||(8629484-8629564)
chr8 (614-694)||(27754432-27754512)
chr8 (707-751)||(29647391-29647435)
chr8 (614-694)||(37822621-37822700)
chr8 (631-694)||(11183573-11183636)
chr8 (571-670)||(16162812-16162911)
chr8 (573-644)||(20186385-20186456)
chr8 (573-644)||(20205452-20205523)
chr8 (637-692)||(37444405-37444460)
chr8 (583-690)||(43504783-43504890)
chr8 (604-694)||(31875547-31875637)
chr8 (641-690)||(2594986-2595035)
chr8 (662-691)||(3600748-3600777)
chr8 (662-691)||(14339615-14339644)
chr8 (621-690)||(30259146-30259215)
[»] chr2 (26 HSPs)
chr2 (591-694)||(37034050-37034153)
chr2 (571-694)||(42817295-42817418)
chr2 (590-692)||(41809183-41809285)
chr2 (571-690)||(8017466-8017585)
chr2 (631-694)||(35378995-35379058)
chr2 (636-694)||(40158746-40158804)
chr2 (610-691)||(43199742-43199823)
chr2 (573-694)||(43985237-43985358)
chr2 (639-694)||(1056116-1056171)
chr2 (611-694)||(12313132-12313215)
chr2 (571-654)||(13866946-13867029)
chr2 (571-694)||(15120211-15120334)
chr2 (571-694)||(43529777-43529900)
chr2 (632-686)||(680539-680593)
chr2 (600-694)||(7283024-7283118)
chr2 (637-691)||(14666579-14666633)
chr2 (571-652)||(36677722-36677804)
chr2 (636-694)||(41817196-41817254)
chr2 (636-690)||(44606094-44606148)
chr2 (657-694)||(9395158-9395195)
chr2 (631-692)||(9556269-9556330)
chr2 (591-692)||(13234536-13234637)
chr2 (571-620)||(28810371-28810420)
chr2 (657-690)||(40682400-40682433)
chr2 (649-694)||(44443349-44443394)
chr2 (636-689)||(45314901-45314954)
[»] chr1 (23 HSPs)
chr1 (571-692)||(4868430-4868550)
chr1 (574-694)||(10199330-10199450)
chr1 (582-694)||(38170620-38170732)
chr1 (571-690)||(7217993-7218112)
chr1 (583-694)||(31517671-31517782)
chr1 (573-654)||(4757406-4757487)
chr1 (582-694)||(37593614-37593726)
chr1 (571-694)||(6292521-6292643)
chr1 (571-626)||(52013983-52014038)
chr1 (636-694)||(3924652-3924710)
chr1 (636-686)||(29635383-29635433)
chr1 (577-694)||(27140506-27140623)
chr1 (632-692)||(50998568-50998629)
chr1 (610-694)||(6262048-6262132)
chr1 (572-692)||(6659710-6659830)
chr1 (642-693)||(3223697-3223747)
chr1 (612-694)||(25479609-25479691)
chr1 (636-694)||(35925718-35925776)
chr1 (644-694)||(46252674-46252724)
chr1 (631-692)||(6031453-6031514)
chr1 (658-695)||(10169442-10169479)
chr1 (657-694)||(15361068-15361105)
chr1 (648-689)||(28910023-28910064)
[»] chr6 (28 HSPs)
chr6 (571-694)||(2460070-2460193)
chr6 (571-694)||(30863274-30863397)
chr6 (611-668)||(3181028-3181085)
chr6 (611-696)||(7931685-7931770)
chr6 (610-690)||(33498651-33498731)
chr6 (636-688)||(33832257-33832309)
chr6 (616-686)||(2455295-2455366)
chr6 (621-683)||(4080955-4081017)
chr6 (571-693)||(33089535-33089657)
chr6 (636-689)||(1575928-1575981)
chr6 (582-675)||(1669728-1669821)
chr6 (625-694)||(9027606-9027675)
chr6 (636-689)||(31624123-31624176)
chr6 (612-692)||(8035108-8035188)
chr6 (614-690)||(20368142-20368218)
chr6 (595-690)||(769170-769265)
chr6 (661-692)||(2023395-2023426)
chr6 (635-694)||(7945867-7945926)
chr6 (625-688)||(30604930-30604993)
chr6 (583-694)||(33080509-33080620)
chr6 (571-694)||(34403883-34404006)
chr6 (612-694)||(281808-281890)
chr6 (648-694)||(6647415-6647461)
chr6 (584-654)||(27857426-27857496)
chr6 (572-653)||(738461-738542)
chr6 (641-694)||(3528831-3528884)
chr6 (631-692)||(31420975-31421036)
chr6 (604-649)||(31668430-31668475)
[»] chr4 (28 HSPs)
chr4 (571-694)||(27123271-27123394)
chr4 (571-694)||(6428046-6428169)
chr4 (582-694)||(33534099-33534211)
chr4 (611-694)||(2996601-2996684)
chr4 (571-684)||(7367973-7368086)
chr4 (585-657)||(18628486-18628558)
chr4 (636-694)||(28300283-28300341)
chr4 (584-690)||(44319981-44320087)
chr4 (612-694)||(46019589-46019671)
chr4 (604-694)||(46247233-46247323)
chr4 (662-695)||(25548138-25548171)
chr4 (611-675)||(4071925-4071989)
chr4 (582-689)||(3176034-3176141)
chr4 (611-690)||(4691880-4691959)
chr4 (611-694)||(28232573-28232656)
chr4 (636-694)||(1137740-1137798)
chr4 (657-687)||(20907382-20907412)
chr4 (636-694)||(20936213-20936271)
chr4 (570-620)||(24193634-24193684)
chr4 (612-694)||(25497584-25497666)
chr4 (604-694)||(46013265-46013355)
chr4 (712-758)||(50875155-50875201)
chr4 (656-694)||(52259659-52259697)
chr4 (571-694)||(679746-679865)
chr4 (692-749)||(39765586-39765643)
chr4 (611-692)||(42461281-42461362)
chr4 (657-694)||(47145990-47146027)
chr4 (611-694)||(47800651-47800731)
[»] chr5 (24 HSPs)
chr5 (571-691)||(11297115-11297235)
chr5 (618-694)||(8089964-8090040)
chr5 (610-694)||(6593327-6593411)
chr5 (583-683)||(10391381-10391481)
chr5 (571-695)||(12459920-12460044)
chr5 (583-694)||(10125649-10125760)
chr5 (631-694)||(13604828-13604891)
chr5 (584-682)||(4273309-4273407)
chr5 (612-694)||(37611175-37611257)
chr5 (612-694)||(37787905-37787987)
chr5 (643-692)||(12467163-12467212)
chr5 (582-654)||(11457166-11457238)
chr5 (662-694)||(31694546-31694578)
chr5 (571-693)||(8651271-8651394)
chr5 (611-694)||(10272390-10272473)
chr5 (584-694)||(6109511-6109621)
chr5 (636-686)||(7674684-7674734)
chr5 (605-694)||(7907909-7907999)
chr5 (636-694)||(36578503-36578561)
chr5 (571-628)||(3734608-3734665)
chr5 (665-694)||(10296439-10296468)
chr5 (577-654)||(11296924-11297001)
chr5 (657-694)||(11707083-11707120)
chr5 (637-694)||(17258868-17258925)
[»] chr7 (26 HSPs)
chr7 (582-694)||(25670516-25670628)
chr7 (605-694)||(22387849-22387938)
chr7 (583-666)||(8094362-8094445)
chr7 (571-654)||(23214923-23215006)
chr7 (631-694)||(46082064-46082127)
chr7 (636-689)||(15740395-15740448)
chr7 (636-685)||(30316999-30317048)
chr7 (571-683)||(33894666-33894778)
chr7 (614-685)||(34035954-34036026)
chr7 (582-694)||(34754740-34754852)
chr7 (583-691)||(44808189-44808297)
chr7 (571-694)||(1422917-1423040)
chr7 (636-690)||(19022568-19022623)
chr7 (663-694)||(25596061-25596092)
chr7 (603-686)||(36537944-36538027)
chr7 (573-644)||(44289964-44290035)
chr7 (574-628)||(529456-529510)
chr7 (573-683)||(28727684-28727794)
chr7 (640-690)||(44821991-44822041)
chr7 (625-694)||(7244708-7244777)
chr7 (573-694)||(12234810-12234931)
chr7 (614-690)||(20526890-20526967)
chr7 (665-694)||(22204496-22204525)
chr7 (665-694)||(22230214-22230243)
chr7 (616-693)||(39360052-39360129)
chr7 (657-694)||(47395103-47395140)
[»] scaffold0459 (1 HSPs)
scaffold0459 (571-654)||(6614-6697)
[»] scaffold0366 (1 HSPs)
scaffold0366 (571-654)||(6612-6695)
[»] scaffold0311 (1 HSPs)
scaffold0311 (612-689)||(10577-10654)


Alignment Details
Target: chr3 (Bit Score: 93; Significance: 7e-45; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 34 - 134
Target Start/End: Original strand, 54044140 - 54044240
Alignment:
Q  34 atgaaagagcaatctaatactaattgtaatcgagacttacgacatcacaaattatttgtcaagaaaaaaagacataacaagttatttcactgaagaatct 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  54044140 atgaaagagcaatctaatactaattgtaatcgagacttacgacataacaaattatttgtcaagaaaaaaaggcataacaagttatttcactgaagaatct 54044239  T
Q  134 t 134  Q
    |    
T  54044240 t 54044240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 571 - 683
Target Start/End: Original strand, 36646301 - 36646413
Alignment:
Q  571 tgtttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgt 670  Q
    |||||||||  |||||||||||| ||||| ||||||||| ||||||| ||||||||||  |||| ||||| |||| |||||||   |||  ||||| |||    
T  36646301 tgtttggatcgacttatttaagcatatctattggcataggcacttgtaagactatttgggagagcttatggaaaccacttatggcatgtccataagctgt 36646400  T
Q  671 tttcaacttattt 683  Q
    ||||| |||||||    
T  36646401 tttcatcttattt 36646413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 611 - 694
Target Start/End: Complemental strand, 24281158 - 24281075
Alignment:
Q  611 cacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    |||||||| || | ||||| |||| |||||||||||||||||||  | |  ||||||||||||||||||| |||||||||||||    
T  24281158 cacttgtgtgattgtttgagagagcttatgaaaacaacttatgatatctccataagttgttttcaacttactttcataagctct 24281075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 611 - 679
Target Start/End: Original strand, 2175808 - 2175876
Alignment:
Q  611 cacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaactt 679  Q
    ||||||| ||||||||||| | || |||||||||||||||||||  ||||| |||| ||||||||||||    
T  2175808 cacttgtaagactatttgagatagtttatgaaaacaacttatgacatgtttgtaagctgttttcaactt 2175876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 642 - 694
Target Start/End: Original strand, 3044249 - 3044301
Alignment:
Q  642 aaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    |||||||||||||  |||| ||||| |||||||||||||||||||||||||||    
T  3044249 aaacaacttatgacatgttcataagctgttttcaacttattttcataagctct 3044301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 614 - 690
Target Start/End: Original strand, 39602172 - 39602248
Alignment:
Q  614 ttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataag 690  Q
    ||||||| |||||||  |||| ||||||| ||| |||||||  |||| |||| ||||||||||||||||||||||||    
T  39602172 ttgtgaggctatttggaagagcttatgaagacagcttatgacatgttcataaattgttttcaacttattttcataag 39602248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 611 - 694
Target Start/End: Original strand, 14548680 - 14548763
Alignment:
Q  611 cacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    ||||||||||||| ||||| |||| ||||||||||||| |||||  | || ||| | |||||||| ||||||| ||||||||||    
T  14548680 cacttgtgagactgtttgagagagcttatgaaaacaacgtatgacattttaataggctgttttcagcttatttccataagctct 14548763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 611 - 690
Target Start/End: Complemental strand, 37273245 - 37273166
Alignment:
Q  611 cacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataag 690  Q
    |||| |||||||| ||||  |||| ||||| |||||||||||||  |||  |||||||||||||||||||||| ||||||    
T  37273245 cactggtgagactgtttgggagagcttatggaaacaacttatgacatgtccataagttgttttcaacttatttccataag 37273166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 583 - 694
Target Start/End: Complemental strand, 43115195 - 43115084
Alignment:
Q  583 cttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttatt 682  Q
    ||||| |||| |||||| ||| ||||  ||||||||||| | ||||  |||| ||||| |||||||||||||  |||  |||| ||||||||| ||||||    
T  43115195 cttatataaggttatctattgacataatcacttgtgagattgtttggaagagtttatggaaacaacttatgacatgtccataacttgttttcagcttatt 43115096  T
Q  683 ttcataagctct 694  Q
    | ||||||||||    
T  43115095 tccataagctct 43115084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 573 - 672
Target Start/End: Complemental strand, 50016035 - 50015936
Alignment:
Q  573 tttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttt 672  Q
    ||||||||  ||||| | || |||||| |||||||| |||||||||||||| ||||| |||  ||||||||| ||| |||||  |||||||||| |||||    
T  50016035 tttggattggcttatctcagtttatctattggcataaacacttgtgagactgtttgagagaacttatgaaaagaacgtatgacatgtttataagatgttt 50015936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 636 - 690
Target Start/End: Complemental strand, 5391965 - 5391911
Alignment:
Q  636 ttatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataag 690  Q
    ||||||||||| |||||||  |||| ||||| |||||||||||||||||||||||    
T  5391965 ttatgaaaacagcttatgacatgttcataagctgttttcaacttattttcataag 5391911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 584 - 694
Target Start/End: Complemental strand, 27793010 - 27792900
Alignment:
Q  584 ttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattt 683  Q
    |||||| ||||||||| ||| |||| ||||  |||||||| |||||||||| ||||| ||| | ||| |||    ||||||||||||||||| |||||||    
T  27793010 ttatttgagcttatctattgacataaacacacgtgagactgtttgatagagtttatggaaatagcttttgacaaatttataagttgttttcagcttattt 27792911  T
Q  684 tcataagctct 694  Q
      |||||||||    
T  27792910 ctataagctct 27792900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 636 - 694
Target Start/End: Complemental strand, 47513739 - 47513681
Alignment:
Q  636 ttatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    |||||||||||| ||||||   ||| ||||||||||||||| |||||||||||||||||    
T  47513739 ttatgaaaacaagttatgacacgttcataagttgttttcaatttattttcataagctct 47513681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 571 - 628
Target Start/End: Complemental strand, 51929892 - 51929835
Alignment:
Q  571 tgtttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttg 628  Q
    |||||||||| |||||||| ||||||||| || ||||| ||||||||||| |||||||    
T  51929892 tgtttggattgacttatttgagcttatctattagcataaacacttgtgaggctatttg 51929835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 630 - 694
Target Start/End: Original strand, 3015821 - 3015885
Alignment:
Q  630 tagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    ||||| |||||||||||||||||||  |||  ||||| |||||||| |||||||| |||||||||    
T  3015821 tagagcttatgaaaacaacttatgacatgtccataagatgttttcatcttattttaataagctct 3015885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 646 - 694
Target Start/End: Complemental strand, 25925818 - 25925770
Alignment:
Q  646 aacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    |||||||||  |||| ||||| |||||||||||||||||||||||||||    
T  25925818 aacttatgacatgttcataagctgttttcaacttattttcataagctct 25925770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 571 - 694
Target Start/End: Complemental strand, 41633509 - 41633388
Alignment:
Q  571 tgtttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgt 670  Q
    ||||||||||   |||||| ||||||||| |||||| |  ||||| ||||||||||    |||| |||| ||||||| | ||||  ||| ||||| ||||    
T  41633509 tgtttggattggtttatttgagcttatctattggcaaa--cacttatgagactattcaggagaggttataaaaacaaatcatgacatgtctataaattgt 41633412  T
Q  671 tttcaacttattttcataagctct 694  Q
    ||||| ||||||||||||||||||    
T  41633411 tttcagcttattttcataagctct 41633388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 636 - 692
Target Start/End: Complemental strand, 42745124 - 42745068
Alignment:
Q  636 ttatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagct 692  Q
    ||||| |||||||||||||  |||| |||||||||||||| ||||||| ||||||||    
T  42745124 ttatgtaaacaacttatgacatgttcataagttgttttcatcttatttccataagct 42745068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 611 - 694
Target Start/End: Original strand, 2152137 - 2152220
Alignment:
Q  611 cacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    |||||||||||||| |||| | |  |||||||||||||||||||  ||||  |||| |||||||||||| |||  |||||||||    
T  2152137 cacttgtgagactaattgagatattttatgaaaacaacttatgacatgttcgtaagctgttttcaacttgtttctataagctct 2152220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 449 - 484
Target Start/End: Complemental strand, 11093743 - 11093708
Alignment:
Q  449 ttcaattgcggagcttgcatttcatgatctgaaatg 484  Q
    |||||||| |||||||||||||||||||||||||||    
T  11093743 ttcaattgtggagcttgcatttcatgatctgaaatg 11093708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 571 - 670
Target Start/End: Original strand, 44014717 - 44014816
Alignment:
Q  571 tgtttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgt 670  Q
    ||||||||||  ||||||| || ||||||  | ||||| |||||||||||||| ||||| | |  ||||||||||| |||||||  |||| |||||||||    
T  44014717 tgtttggattggcttatttgagtttatctactagcataaacacttgtgagactgtttgagaaaacttatgaaaacagcttatgacctgttcataagttgt 44014816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 571 - 690
Target Start/End: Complemental strand, 45541722 - 45541603
Alignment:
Q  571 tgtttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgt 670  Q
    |||||||||| |||||||| ||||||| |  ||| ||| |||||||| ||||| |||   |||  ||||||||||| |||||||  |||| ||||| |||    
T  45541722 tgtttggattgacttatttgagcttatttaatggtataaacacttgtaagactgtttagaagaacttatgaaaacagcttatgacatgttcataagctgt 45541623  T
Q  671 tttcaacttattttcataag 690  Q
    |||||  ||||| |||||||    
T  45541622 tttcaggttattctcataag 45541603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 612 - 654
Target Start/End: Original strand, 25182947 - 25182989
Alignment:
Q  612 acttgtgagactatttgatagagattatgaaaacaacttatga 654  Q
    |||||||||||| ||||| |||| |||||||||||||||||||    
T  25182947 acttgtgagactgtttgagagagcttatgaaaacaacttatga 25182989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 573 - 694
Target Start/End: Original strand, 20194954 - 20195074
Alignment:
Q  573 tttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttt 672  Q
    |||||||| | |||||| | |||||||| | |||||  || |||||||||| ||||  |||| |||||||||||  ||||||  | || | |||||||||    
T  20194954 tttggattgatttatttgaacttatcttcttgcataagcagttgtgagactgtttgtgagagcttatgaaaacagtttatgacatattcaaaagttgttt 20195053  T
Q  673 tcaacttattttcataagctct 694  Q
    ||| ||| ||||||||||||||    
T  20195054 tcagctt-ttttcataagctct 20195074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 617 - 694
Target Start/End: Complemental strand, 21574595 - 21574518
Alignment:
Q  617 tgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    ||||||| ||||  |||| |||||||||||||||||||  |||| ||||| || ||| | ||||||| ||||||||||    
T  21574595 tgagactgtttgggagagcttatgaaaacaacttatgacatgttcataagctgcttttagcttatttccataagctct 21574518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 571 - 648
Target Start/End: Complemental strand, 32663789 - 32663712
Alignment:
Q  571 tgtttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaac 648  Q
    ||||||||||  ||||||| |||||||||   | || | |||||||||||||||||||| |||| ||||| |||||||    
T  32663789 tgtttggattggcttatttgagcttatctaccgacaaatacacttgtgagactatttgagagagtttatggaaacaac 32663712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 571 - 652
Target Start/End: Complemental strand, 50211886 - 50211805
Alignment:
Q  571 tgtttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttat 652  Q
    |||||||||| |||||||| |||||||||  |  ||||  ||||||| ||||| ||||| |||  |||||||||||||||||    
T  50211886 tgtttggattaacttattttagcttatctactaacataagcacttgtaagactgtttgagagaacttatgaaaacaacttat 50211805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 562 - 694
Target Start/End: Complemental strand, 9700161 - 9700029
Alignment:
Q  562 gtaaggccgtgtttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgttt 661  Q
    |||||| | |||||||||| |||||||| |||||||||  | ||||| |||||||||||||||||||| |||| || ||||| ||| ||||||  |||      
T  9700161 gtaagggcctgtttggattaacttatttgagcttatctactagcataaacacttgtgagactatttgagagagcttgtgaaatcaatttatgacatgtcc 9700062  T
Q  662 ataagttgttttcaacttattttcataagctct 694  Q
    ||||| |||||||| ||||||||||||||||||    
T  9700061 ataagctgttttcaccttattttcataagctct 9700029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 571 - 694
Target Start/End: Complemental strand, 7714393 - 7714270
Alignment:
Q  571 tgtttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgt 670  Q
    |||||||||| |||||||| ||||||| |  || |||| |||||||||||||| ||||  | || || || |||||||||||||| |||  || || |||    
T  7714393 tgtttggattgacttatttgagcttatataatgtcataaacacttgtgagactgtttggaaaagcttgtggaaacaacttatgaaatgtcgatgagctgt 7714294  T
Q  671 tttcaacttattttcataagctct 694  Q
    ||||||||||||||||| ||||||    
T  7714293 tttcaacttattttcatgagctct 7714270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 571 - 694
Target Start/End: Complemental strand, 26479936 - 26479813
Alignment:
Q  571 tgtttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgt 670  Q
    |||||||||| |||||||||||||||||| ||| || |   |||||||| ||||||||  |||| ||||| ||||||||||||   ||| |||||||| |    
T  26479936 tgtttggattgacttatttaagcttatctattgacacaaggacttgtgaaactatttgcgagagcttatggaaacaacttatgtcatgtctataagtttt 26479837  T
Q  671 tttcaacttattttcataagctct 694  Q
    ||||| | ||||| ||||||||||    
T  26479836 tttcagcgtatttccataagctct 26479813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 571 - 694
Target Start/End: Complemental strand, 8060819 - 8060697
Alignment:
Q  571 tgtttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgt 670  Q
    |||||||||| |||||||| ||| ||||| ||| |||| ||||||  || ||| ||||| |||| |||||||||||| ||||| |  ||| ||||||| |    
T  8060819 tgtttggattgacttatttgagcatatctattgacataaacacttc-gaaactgtttgagagagcttatgaaaacaaattatggaaagttcataagttat 8060721  T
Q  671 tttcaacttattttcataagctct 694  Q
    ||||| ||||||| ||||||||||    
T  8060720 tttcagcttatttccataagctct 8060697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 576 - 694
Target Start/End: Complemental strand, 6950468 - 6950350
Alignment:
Q  576 ggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttca 675  Q
    ||||| |||||||| || ||||||  ||||||| ||| |||||||| | ||||  |||| ||||| ||||||| |||||  |||  ||||||||||||||    
T  6950468 ggattgacttatttgagtttatctactggcataaacatttgtgagattgtttgggagagcttatgtaaacaacctatgacatgtcgataagttgttttca 6950369  T
Q  676 acttattttcataagctct 694  Q
     ||||||| ||||||||||    
T  6950368 gcttatttccataagctct 6950350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 587 - 692
Target Start/End: Original strand, 13000359 - 13000464
Alignment:
Q  587 tttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttca 686  Q
    |||||||||| ||  |||||||  ||||||||||||||||||  |||| |||||  ||||||||||||  |||  | |||||||||||| ||||||| ||    
T  13000359 tttaagcttacctactggcataagcacttgtgagactatttgcaagagtttatggtaacaacttatgacatgtccacaagttgttttcagcttatttcca 13000458  T
Q  687 taagct 692  Q
    ||||||    
T  13000459 taagct 13000464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 614 - 694
Target Start/End: Complemental strand, 30918220 - 30918141
Alignment:
Q  614 ttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    |||||||||| ||||| |||| ||||||||||||||| |||  | || |||||||||||||| ||||||| ||||||||||    
T  30918220 ttgtgagactgtttgagagagcttatgaaaacaacttgtgacat-ttcataagttgttttcagcttatttccataagctct 30918141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 611 - 694
Target Start/End: Complemental strand, 778500 - 778417
Alignment:
Q  611 cacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    ||||||||||||| ||||  |||  ||||||||||||| || ||   |||| |||||||||||||||||| |||||||||||||    
T  778500 cacttgtgagactgtttgcaagaacttatgaaaacaacataagacacgtttgtaagttgttttcaacttactttcataagctct 778417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 591 - 686
Target Start/End: Original strand, 11569396 - 11569491
Alignment:
Q  591 agcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttca 686  Q
    |||||||||  |||||||  ||||||||||||| ||| | |||| ||||| ||||| |||||||  |||  |||||||||||||| ||||||||||    
T  11569396 agcttatctgctggcataaccacttgtgagactgtttaagagagcttatggaaacagcttatgacatgtacataagttgttttcagcttattttca 11569491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 636 - 690
Target Start/End: Original strand, 11770995 - 11771049
Alignment:
Q  636 ttatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataag 690  Q
    |||||||||||||||||||  ||| |||| ||||||||||||||||||| |||||    
T  11770995 ttatgaaaacaacttatgatatgtctatacgttgttttcaacttatttttataag 11771049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 583 - 689
Target Start/End: Original strand, 30191072 - 30191178
Alignment:
Q  583 cttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttatt 682  Q
    ||||||| || |||||| ||||||||  ||||||| ||||| ||||  |||| ||||| |||||||||||||  |||| | || ||||||||| ||||||    
T  30191072 cttatttgagtttatctattggcataagcacttgttagactgtttgggagagcttatggaaacaacttatgacatgttcaaaacttgttttcagcttatt 30191171  T
Q  683 ttcataa 689  Q
    | |||||    
T  30191172 tccataa 30191178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 636 - 688
Target Start/End: Original strand, 32840969 - 32841022
Alignment:
Q  636 ttatgaaaacaacttatga-agtgtttataagttgttttcaacttattttcata 688  Q
    ||||||||||||||||||| | |||| |||||||||||||| ||||||||||||    
T  32840969 ttatgaaaacaacttatgacattgttcataagttgttttcagcttattttcata 32841022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 571 - 683
Target Start/End: Complemental strand, 2091914 - 2091802
Alignment:
Q  571 tgtttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgt 670  Q
    |||||||||| | |||||| | ||||||   ||||||| |||||||||||| | ||||| |||| | |  ||||||||||||||  | |  |||||||||    
T  2091914 tgtttggattgatttatttgatcttatccaatggcataaacacttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgt 2091815  T
Q  671 tttcaacttattt 683  Q
    |||||||||||||    
T  2091814 tttcaacttattt 2091802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 584 - 652
Target Start/End: Original strand, 7918713 - 7918781
Alignment:
Q  584 ttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttat 652  Q
    |||||||| |||||||  | ||||| |||||||||||||| ||||  |||| |||||||||||||||||    
T  7918713 ttatttaaacttatctactagcataaacacttgtgagactgtttgggagagcttatgaaaacaacttat 7918781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 614 - 694
Target Start/End: Complemental strand, 8629564 - 8629484
Alignment:
Q  614 ttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    |||||||||  ||||| |||  |||||||||||||||||||  || | |||||||||||||||||| | || |||||||||    
T  8629564 ttgtgagaccgtttgagagaacttatgaaaacaacttatgacatgatcataagttgttttcaacttctatttataagctct 8629484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 614 - 694
Target Start/End: Complemental strand, 27754512 - 27754432
Alignment:
Q  614 ttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    |||||||||||||||  |||  |||||||||||  ||||||  || ||||||||||  |||| ||||||||||||||||||    
T  27754512 ttgtgagactatttgggagaacttatgaaaacagtttatgacatgattataagttgcgttcagcttattttcataagctct 27754432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 707 - 751
Target Start/End: Complemental strand, 29647435 - 29647391
Alignment:
Q  707 agcaccgacacttctgattaaaggcgtgtctggtgttcgatatgt 751  Q
    ||||||||||||||||||| ||| ||||||||||||| |||||||    
T  29647435 agcaccgacacttctgattgaagacgtgtctggtgtttgatatgt 29647391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 614 - 694
Target Start/End: Original strand, 37822621 - 37822700
Alignment:
Q  614 ttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    |||||||||| ||||| | |  |||| ||||||| ||||||  ||||| |||||||||||| |||||||||||||||||||    
T  37822621 ttgtgagactgtttgagaaaatttattaaaacaatttatgatatgtttgtaagttgttttc-acttattttcataagctct 37822700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 631 - 694
Target Start/End: Complemental strand, 11183636 - 11183573
Alignment:
Q  631 agagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    |||| |||| ||||||||||||||  ||| |||||| |||||||| ||||||| ||||||||||    
T  11183636 agagcttataaaaacaacttatgatatgtctataagctgttttcagcttatttccataagctct 11183573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 571 - 670
Target Start/End: Complemental strand, 16162911 - 16162812
Alignment:
Q  571 tgtttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgt 670  Q
    ||||||||||  ||||||| || ||||||  | ||||| |||||||||||||| ||||| | |  ||||||||||| |||||||  |||| |||||||||    
T  16162911 tgtttggattggcttatttgagtttatctactagcataaacacttgtgagactgtttgagaaaacttatgaaaacagcttatgacctgttcataagttgt 16162812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 573 - 644
Target Start/End: Original strand, 20186385 - 20186456
Alignment:
Q  573 tttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaa 644  Q
    |||| ||| |||||||| |||||||||  ||||||||||||| |||||||||||  | |||| |||||||||    
T  20186385 tttgcattgacttatttgagcttatctagtggcatagacactggtgagactattcaagagagtttatgaaaa 20186456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 573 - 644
Target Start/End: Original strand, 20205452 - 20205523
Alignment:
Q  573 tttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaa 644  Q
    |||| ||| |||||||| |||||||||  ||||||||||||| |||||||||||  | |||| |||||||||    
T  20205452 tttgcattgacttatttgagcttatctagtggcatagacactggtgagactattcaagagagtttatgaaaa 20205523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 637 - 692
Target Start/End: Original strand, 37444405 - 37444460
Alignment:
Q  637 tatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagct 692  Q
    |||||||||||||| | |  |||||||||||| |||||| ||||||||||||||||    
T  37444405 tatgaaaacaacttttaacatgtttataagttattttcagcttattttcataagct 37444460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 583 - 690
Target Start/End: Complemental strand, 43504890 - 43504783
Alignment:
Q  583 cttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttatt 682  Q
    |||||||||||||||||  |||| ||  |||||||| |||| |||   |||  | |||||||||||||| ||  |||||||||| |||||||| ||||||    
T  43504890 cttatttaagcttatctactggcttaagcacttgtgtgactgtttcggagaactgatgaaaacaacttacgacttgtttataagctgttttcagcttatt 43504791  T
Q  683 ttcataag 690  Q
    | ||||||    
T  43504790 tccataag 43504783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 604 - 694
Target Start/End: Original strand, 31875547 - 31875637
Alignment:
Q  604 gcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    ||||| ||||| |||| ||| ||||| | || ||||| |||||||||||||  |||  |||||   |||||||||||||||||||||||||    
T  31875547 gcataaacactagtgacactgtttgagaaagcttatggaaacaacttatgacatgtccataagccattttcaacttattttcataagctct 31875637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 641 - 690
Target Start/End: Original strand, 2594986 - 2595035
Alignment:
Q  641 aaaacaacttatgaagtgtttataagttgttttcaacttattttcataag 690  Q
    ||||||||||||||  |||| |||||||||||||| |||||| |||||||    
T  2594986 aaaacaacttatgacatgttcataagttgttttcagcttattctcataag 2595035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 662 - 691
Target Start/End: Original strand, 3600748 - 3600777
Alignment:
Q  662 ataagttgttttcaacttattttcataagc 691  Q
    ||||||||||||||||||||||||||||||    
T  3600748 ataagttgttttcaacttattttcataagc 3600777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 662 - 691
Target Start/End: Original strand, 14339615 - 14339644
Alignment:
Q  662 ataagttgttttcaacttattttcataagc 691  Q
    ||||||||||||||||||||||||||||||    
T  14339615 ataagttgttttcaacttattttcataagc 14339644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 621 - 690
Target Start/End: Complemental strand, 30259215 - 30259146
Alignment:
Q  621 actatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataag 690  Q
    ||||||||| |||| ||||| ||||| |||||||  ||| |||||||||||||||  |||||| ||||||    
T  30259215 actatttgagagagcttatggaaacagcttatgatatgtctataagttgttttcagtttatttccataag 30259146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 591 - 694
Target Start/End: Complemental strand, 37034153 - 37034050
Alignment:
Q  591 agcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataag 690  Q
    |||||||||  ||||||| | ||||||||||||||||| ||||||||||| ||||| |||| ||  ||||||||| |||||||||||||||||  |||||    
T  37034153 agcttatctactggcatacatacttgtgagactatttgttagagattatggaaacagcttaagacatgtttataaattgttttcaacttatttctataag 37034054  T
Q  691 ctct 694  Q
    ||||    
T  37034053 ctct 37034050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 571 - 694
Target Start/End: Original strand, 42817295 - 42817418
Alignment:
Q  571 tgtttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgt 670  Q
    |||||||||| |||||||||| ||||| | |||| ||  | ||||||||||||||||  ||||| |||||||||||||||| |   ||||  ||||||||    
T  42817295 tgtttggattgacttatttaatcttatttattggtattaatacttgtgagactatttagtagagtttatgaaaacaacttacggcatgttcttaagttgt 42817394  T
Q  671 tttcaacttattttcataagctct 694  Q
    ||| | |||| || ||||||||||    
T  42817395 ttttagcttacttccataagctct 42817418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 590 - 692
Target Start/End: Original strand, 41809183 - 41809285
Alignment:
Q  590 aagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataa 689  Q
    |||||||| | |||||||| ||||||||||||||  |||  |||| || || |||||||||||||  |||| |||||||||||| | ||||||| |||||    
T  41809183 aagcttatttgttggcataaacacttgtgagactgattgtaagagcttgtggaaacaacttatgacatgttcataagttgtttttagcttatttccataa 41809282  T
Q  690 gct 692  Q
    |||    
T  41809283 gct 41809285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 571 - 690
Target Start/End: Complemental strand, 8017585 - 8017466
Alignment:
Q  571 tgtttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgt 670  Q
    |||||||||| |||||||| || |||||| ||| ||||  |||||||| || ||||||  |||  ||||||||||| |||||||  |||| |||| ||||    
T  8017585 tgtttggattgacttatttgaggttatctattgacataagcacttgtgcgattatttgggagaacttatgaaaacagcttatgatatgttcataatttgt 8017486  T
Q  671 tttcaacttattttcataag 690  Q
    ||||  | ||||||||||||    
T  8017485 tttctgcgtattttcataag 8017466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 631 - 694
Target Start/End: Original strand, 35378995 - 35379058
Alignment:
Q  631 agagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    |||| ||||||||||| || ||||  |||| |||||||||||||| ||||||||||||||||||    
T  35378995 agagcttatgaaaacagctgatgacttgttcataagttgttttcagcttattttcataagctct 35379058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 636 - 694
Target Start/End: Complemental strand, 40158804 - 40158746
Alignment:
Q  636 ttatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    ||||||||||| |||||||  ||||||||||||||||||| |||| || ||||||||||    
T  40158804 ttatgaaaacagcttatgacatgtttataagttgttttcagcttaattacataagctct 40158746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 610 - 691
Target Start/End: Original strand, 43199742 - 43199823
Alignment:
Q  610 acacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagc 691  Q
    |||||||||||||| ||||  |||  ||| ||| ||||||| |||  ||||||||||||||||||| |||| ||||||||||    
T  43199742 acacttgtgagactgtttgggagaagttacgaatacaacttgtgacatgtttataagttgttttcagcttaatttcataagc 43199823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 573 - 694
Target Start/End: Complemental strand, 43985358 - 43985237
Alignment:
Q  573 tttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttt 672  Q
    |||||||  ||||||||||| ||||||  || |||| |||||||| | ||| ||||| ||||||||   |||||||||||||  |||  ||||| | |||    
T  43985358 tttggatcgacttatttaagtttatctactgacataaacacttgtaaaactgtttgagagagattactgaaacaacttatgacatgtccataagcttttt 43985259  T
Q  673 tcaacttattttcataagctct 694  Q
    ||||||| ||| ||||||||||    
T  43985258 tcaacttgtttccataagctct 43985237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 639 - 694
Target Start/End: Original strand, 1056116 - 1056171
Alignment:
Q  639 tgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    ||||||||||||||||  |||| || ||||||||||| ||| ||||||||||||||    
T  1056116 tgaaaacaacttatgacatgttcattagttgttttcagcttgttttcataagctct 1056171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 611 - 694
Target Start/End: Original strand, 12313132 - 12313215
Alignment:
Q  611 cacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    ||||||||||| | ||||  |||  ||||||||||| ||||||   |||| |||||||| ||||| ||||||||||||||||||    
T  12313132 cacttgtgagattgtttgggagaatttatgaaaacagcttatgccatgttcataagttgatttcaccttattttcataagctct 12313215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 571 - 654
Target Start/End: Complemental strand, 13867029 - 13866946
Alignment:
Q  571 tgtttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatga 654  Q
    |||||||||| || ||||| |||||||||  || |||| |||||||||||||| ||||| |||  ||| ||||||||| |||||    
T  13867029 tgtttggattgacctatttgagcttatctactgccataaacacttgtgagactgtttgagagaacttaagaaaacaacctatga 13866946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 571 - 694
Target Start/End: Complemental strand, 15120334 - 15120211
Alignment:
Q  571 tgtttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgt 670  Q
    |||||||||| |||||||| | |||||||  | ||||| ||| ||||||  || ||||  |||| ||||| |||||||||||||  |||| || || |||    
T  15120334 tgtttggattgacttatttgaacttatctactagcataaacagttgtgaatctgtttgggagagcttatggaaacaacttatgacatgttcattagctgt 15120235  T
Q  671 tttcaacttattttcataagctct 694  Q
    ||| | |||||||| |||||||||    
T  15120234 tttaagcttattttgataagctct 15120211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 571 - 694
Target Start/End: Original strand, 43529777 - 43529900
Alignment:
Q  571 tgtttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgt 670  Q
    |||||| ||| |||||||| ||||||||| |||| |||  ||||| ||| ||| ||||  |||  ||||||||||| ||||||   |||| ||||| | |    
T  43529777 tgtttgaattgacttatttgagcttatctattggtataagcacttctgacactgtttgggagaatttatgaaaacagcttatgccatgttcataagctat 43529876  T
Q  671 tttcaacttattttcataagctct 694  Q
    |||||  |||||||||||||||||    
T  43529877 tttcagtttattttcataagctct 43529900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 632 - 686
Target Start/End: Complemental strand, 680593 - 680539
Alignment:
Q  632 gagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttca 686  Q
    ||||||||||||||| |||||||  |||||||||  |||||||| ||||||||||    
T  680593 gagattatgaaaacagcttatgacatgtttataaactgttttcagcttattttca 680539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 600 - 694
Target Start/End: Complemental strand, 7283118 - 7283024
Alignment:
Q  600 tttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    |||| |||| |||||||||||||||||||    || || || |||||||||||||  |||  |||||||||||||| ||||| | ||||||||||    
T  7283118 tttgacataaacacttgtgagactatttggattagcttttggaaacaacttatgatatgtccataagttgttttcatcttatatccataagctct 7283024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 637 - 691
Target Start/End: Complemental strand, 14666633 - 14666579
Alignment:
Q  637 tatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagc 691  Q
    |||| |||||||||||||  |||| ||| |||||||||| |||||||||||||||    
T  14666633 tatggaaacaacttatgacatgttcataggttgttttcaccttattttcataagc 14666579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 571 - 652
Target Start/End: Complemental strand, 36677804 - 36677722
Alignment:
Q  571 tgtttggattcacttatttaagcttatct-tttggcatagacacttgtgagactatttgatagagattatgaaaacaacttat 652  Q
    |||||||||| |||||||| || |||||| |||| ||||  ||||||||||||||||  | |||| ||||||||||| |||||    
T  36677804 tgtttggattaacttatttgagtttatctatttgacataagcacttgtgagactattcaagagagcttatgaaaacagcttat 36677722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 636 - 694
Target Start/End: Complemental strand, 41817254 - 41817196
Alignment:
Q  636 ttatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    ||||||||||| |||||||  |||| |||| ||||||||| ||||||| ||||||||||    
T  41817254 ttatgaaaacatcttatgacatgttgataatttgttttcagcttatttccataagctct 41817196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 636 - 690
Target Start/End: Original strand, 44606094 - 44606148
Alignment:
Q  636 ttatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataag 690  Q
    |||||||||||||||||||  |||  |||||||||||||| || |||||||||||    
T  44606094 ttatgaaaacaacttatgacatgtccataagttgttttcagctgattttcataag 44606148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 657 - 694
Target Start/End: Complemental strand, 9395195 - 9395158
Alignment:
Q  657 tgtttataagttgttttcaacttattttcataagctct 694  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  9395195 tgtttataagctgttttcagcttattttcataagctct 9395158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 631 - 692
Target Start/End: Complemental strand, 9556330 - 9556269
Alignment:
Q  631 agagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagct 692  Q
    |||| |||||||||||||| ||||  |||  |||||| | ||||||||||||||||||||||    
T  9556330 agagcttatgaaaacaactaatgacatgtccataagtagatttcaacttattttcataagct 9556269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 591 - 692
Target Start/End: Complemental strand, 13234637 - 13234536
Alignment:
Q  591 agcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataag 690  Q
    ||||||||  ||||||||  ||||||| ||||| ||||| || | |||  ||||||  ||||||  |||  |||||||||||||||||||| ||||||||    
T  13234637 agcttatcaattggcataagcacttgtaagactgtttgagagtgcttacaaaaacacattatgacatgtccataagttgttttcaacttatcttcataag 13234538  T
Q  691 ct 692  Q
    ||    
T  13234537 ct 13234536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 571 - 620
Target Start/End: Original strand, 28810371 - 28810420
Alignment:
Q  571 tgtttggattcacttatttaagcttatcttttggcatagacacttgtgag 620  Q
    |||||||||| |||||||| ||||| ||| |||||||| |||||||||||    
T  28810371 tgtttggattgacttatttgagcttctctattggcataaacacttgtgag 28810420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 657 - 690
Target Start/End: Original strand, 40682400 - 40682433
Alignment:
Q  657 tgtttataagttgttttcaacttattttcataag 690  Q
    |||| |||||||||||||||||||||||||||||    
T  40682400 tgttcataagttgttttcaacttattttcataag 40682433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 649 - 694
Target Start/End: Complemental strand, 44443394 - 44443349
Alignment:
Q  649 ttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    ||||||| |||| |||||||||||||| |||||||||||| |||||    
T  44443394 ttatgaaatgttcataagttgttttcagcttattttcatatgctct 44443349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 636 - 689
Target Start/End: Complemental strand, 45314954 - 45314901
Alignment:
Q  636 ttatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataa 689  Q
    ||||| |||||||||||||  | |||||||||||||||||  ||||||||||||    
T  45314954 ttatgtaaacaacttatgacatatttataagttgttttcagtttattttcataa 45314901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 571 - 692
Target Start/End: Complemental strand, 4868550 - 4868430
Alignment:
Q  571 tgtttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgt 670  Q
    |||||||||| | |||||| |  |||||| ||| ||||| ||||||||||||| ||||| |||| |||||||| ||||||||||  |||  |||||||||    
T  4868550 tgtttggattgatttatttgaatttatctattgacataggcacttgtgagactgtttgagagagtttatgaaa-caacttatgacatgtcaataagttgt 4868452  T
Q  671 tttcaacttattttcataagct 692  Q
    ||||||||||||| ||||||||    
T  4868451 tttcaacttatttacataagct 4868430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 574 - 694
Target Start/End: Original strand, 10199330 - 10199450
Alignment:
Q  574 ttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgtttt 673  Q
    ||||||| |||||||| |||||||||  |  ||||  ||||||||| ||||||||  |||  | ||||||| | |||||||  |||| ||||||||||||    
T  10199330 ttggattgacttatttgagcttatctactaacataagcacttgtgacactatttgggagaactcatgaaaatagcttatgacatgttcataagttgtttt 10199429  T
Q  674 caacttattttcataagctct 694  Q
    || ||||||||||||||||||    
T  10199430 cagcttattttcataagctct 10199450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 582 - 694
Target Start/End: Original strand, 38170620 - 38170732
Alignment:
Q  582 acttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttat 681  Q
    |||||||||| ||||| |  ||||||  ||||||||||||||  |||  |||| ||||||||||| |||||||  |||| |||||||||||||| ||| |    
T  38170620 acttatttaaccttatatactggcatgaacacttgtgagactgcttgggagagcttatgaaaacagcttatgacatgttcataagttgttttcagcttgt 38170719  T
Q  682 tttcataagctct 694  Q
    |||| ||||||||    
T  38170720 tttcctaagctct 38170732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 571 - 690
Target Start/End: Original strand, 7217993 - 7218112
Alignment:
Q  571 tgtttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgt 670  Q
    |||||||||| ||||||||||||||||||   |||||| |||||| ||||| | ||||   ||| || ||||||| ||||||||   ||| | ||| |||    
T  7217993 tgtttggattgacttatttaagcttatctaccggcataaacacttctgagattgtttgggggagcttgtgaaaacgacttatgacacgttcacaagctgt 7218092  T
Q  671 tttcaacttattttcataag 690  Q
    ||||||||||||||||||||    
T  7218093 tttcaacttattttcataag 7218112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 583 - 694
Target Start/End: Original strand, 31517671 - 31517782
Alignment:
Q  583 cttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttatt 682  Q
    ||||||| ||||||| |  |||||||  ||||||||||||| ||||  |||  |||| ||||||||| ||||  |||| ||||| |||||||| ||||||    
T  31517671 cttatttgagcttatttactggcataagcacttgtgagactgtttgggagaacttatcaaaacaactcatgacatgttcataagctgttttcagcttatt 31517770  T
Q  683 ttcataagctct 694  Q
    ||||||||||||    
T  31517771 ttcataagctct 31517782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 573 - 654
Target Start/End: Complemental strand, 4757487 - 4757406
Alignment:
Q  573 tttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatga 654  Q
    ||||| || |||||||| ||||||||| ||| |||| ||||||||||||| |||||  |||  |||||||||||||||||||    
T  4757487 tttggtttgacttatttgagcttatctattgacataaacacttgtgagaccatttggcagaacttatgaaaacaacttatga 4757406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 582 - 694
Target Start/End: Original strand, 37593614 - 37593726
Alignment:
Q  582 acttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttat 681  Q
    |||||||| ||||||| |  ||||||| |||||||| ||||| ||||  | |  | ||||| |||||||||||  |||| ||||| |||||||| |||||    
T  37593614 acttatttgagcttatatactggcataaacacttgttagactgtttgggaaaactaatgaacacaacttatgacatgttcataagctgttttcagcttat 37593713  T
Q  682 tttcataagctct 694  Q
    |||||||||||||    
T  37593714 tttcataagctct 37593726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 571 - 694
Target Start/End: Complemental strand, 6292643 - 6292521
Alignment:
Q  571 tgtttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgt 670  Q
    |||||||||| |||||||| |||||||||  || ||||  ||||| ||||| | ||||  ||| ||| | |||||| |||||||  |||| ||||| |||    
T  6292643 tgtttggattgacttatttgagcttatctactgacataagcacttttgagattgtttgggaga-atttttaaaacagcttatgacatgttcataagctgt 6292545  T
Q  671 tttcaacttattttcataagctct 694  Q
    ||||| ||||||||||||||||||    
T  6292544 tttcagcttattttcataagctct 6292521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 571 - 626
Target Start/End: Complemental strand, 52014038 - 52013983
Alignment:
Q  571 tgtttggattcacttatttaagcttatcttttggcatagacacttgtgagactatt 626  Q
    |||||||||| |||||||| ||||||||| |||||||| |||| ||||||||||||    
T  52014038 tgtttggattaacttatttgagcttatctattggcataaacacgtgtgagactatt 52013983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 636 - 694
Target Start/End: Complemental strand, 3924710 - 3924652
Alignment:
Q  636 ttatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    |||||||||||| ||||||| ||||||||||||||||||  ||||||| ||||| ||||    
T  3924710 ttatgaaaacaatttatgaaatgtttataagttgttttcggcttatttccataaactct 3924652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 636 - 686
Target Start/End: Complemental strand, 29635433 - 29635383
Alignment:
Q  636 ttatgaaaacaacttatgaagtgtttataagttgttttcaacttattttca 686  Q
    |||||||||||| ||||||  ||||||||||||||||||| ||||||||||    
T  29635433 ttatgaaaacaagttatgacatgtttataagttgttttcagcttattttca 29635383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 577 - 694
Target Start/End: Complemental strand, 27140623 - 27140506
Alignment:
Q  577 gattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaa 676  Q
    |||| |||||| | ||||||||| ||| |||| ||| |||| || || ||||| |||| ||| | ||||| |||||||  |||  ||||||||||||||     
T  27140623 gattgacttatatgagcttatctattgacataaacaattgtaagtctctttgagagagtttaaggaaacagcttatgacatgtccataagttgttttcag 27140524  T
Q  677 cttattttcataagctct 694  Q
    ||||||| ||||||||||    
T  27140523 cttatttgcataagctct 27140506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 632 - 692
Target Start/End: Complemental strand, 50998629 - 50998568
Alignment:
Q  632 gagattatgaaaacaacttatgaagtgttt-ataagttgttttcaacttattttcataagct 692  Q
    |||||||||||||||||||||||  ||||| |||| | ||||||| ||||||||||||||||    
T  50998629 gagattatgaaaacaacttatgacatgtttaataaatggttttcagcttattttcataagct 50998568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 610 - 694
Target Start/End: Complemental strand, 6262132 - 6262048
Alignment:
Q  610 acacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    |||||||||||||| |||   |||| |||||| ||||||||||||  |||| ||||| | |||||||||||||| || |||||||    
T  6262132 acacttgtgagactgtttacaagagcttatgagaacaacttatgacatgttcataagctattttcaacttatttccacaagctct 6262048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 572 - 692
Target Start/End: Complemental strand, 6659830 - 6659710
Alignment:
Q  572 gtttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgtt 671  Q
    ||||||||| |||||||| |||||||||  | |||||  ||||||||||||||||||  | || |||||| |||||| | ||   |||  ||||||||||    
T  6659830 gtttggattgacttattttagcttatctactagcataagcacttgtgagactatttgggatagcttatgataacaacatttggcatgtccataagttgtt 6659731  T
Q  672 ttcaacttattttcataagct 692  Q
    |||| || ||||| |||||||    
T  6659730 ttcagctcattttaataagct 6659710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 642 - 693
Target Start/End: Complemental strand, 3223747 - 3223697
Alignment:
Q  642 aaacaacttatgaagtgtttataagttgttttcaacttattttcataagctc 693  Q
    |||||||||||||  ||||||||||||||||||| |||| ||||||||||||    
T  3223747 aaacaacttatgacatgtttataagttgttttcagctta-tttcataagctc 3223697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 612 - 694
Target Start/End: Complemental strand, 25479691 - 25479609
Alignment:
Q  612 acttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    |||| ||||||||||||   ||| ||||||||| |  ||||||  |||| || ||||||||||| ||||||||||||||||||    
T  25479691 acttctgagactatttgtgtgagcttatgaaaatagattatgacatgttcattagttgttttcagcttattttcataagctct 25479609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 636 - 694
Target Start/End: Complemental strand, 35925776 - 35925718
Alignment:
Q  636 ttatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    ||||||||||| |||||||  |||| ||||| |||||||||||||||| ||||| ||||    
T  35925776 ttatgaaaacagcttatgacatgttcataagctgttttcaacttatttccataaactct 35925718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 644 - 694
Target Start/End: Original strand, 46252674 - 46252724
Alignment:
Q  644 acaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    |||||||||||  |||| ||||||||||||||  |||||||||||||||||    
T  46252674 acaacttatgacatgttcataagttgttttcaggttattttcataagctct 46252724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 631 - 692
Target Start/End: Original strand, 6031453 - 6031514
Alignment:
Q  631 agagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagct 692  Q
    |||| ||||||||||| ||||||| ||| | ||||||| |||||| ||||||||| ||||||    
T  6031453 agagcttatgaaaacagcttatgacgtgctcataagttcttttcaccttattttcgtaagct 6031514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 658 - 695
Target Start/End: Original strand, 10169442 - 10169479
Alignment:
Q  658 gtttataagttgttttcaacttattttcataagctctg 695  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  10169442 gtttataagttgttttcaaattattttcataaactctg 10169479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 657 - 694
Target Start/End: Complemental strand, 15361105 - 15361068
Alignment:
Q  657 tgtttataagttgttttcaacttattttcataagctct 694  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  15361105 tgttcataagttgttttcagcttattttcataagctct 15361068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 689
Target Start/End: Complemental strand, 28910064 - 28910023
Alignment:
Q  648 cttatgaagtgtttataagttgttttcaacttattttcataa 689  Q
    |||||||  ||||||||||||||||||| |||||||||||||    
T  28910064 cttatgacttgtttataagttgttttcatcttattttcataa 28910023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 5e-18; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 571 - 694
Target Start/End: Original strand, 2460070 - 2460193
Alignment:
Q  571 tgtttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgt 670  Q
    |||||||||| |||||||| |||||||    | |||||   |||||||||||| ||||| |||| ||||| |||||||||||||  ||| | ||||||||    
T  2460070 tgtttggattaacttatttgagcttataaactagcataagtacttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgt 2460169  T
Q  671 tttcaacttattttcataagctct 694  Q
    ||||||||||||| ||||||||||    
T  2460170 tttcaacttatttccataagctct 2460193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 571 - 694
Target Start/End: Complemental strand, 30863397 - 30863274
Alignment:
Q  571 tgtttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgt 670  Q
    |||||||| | |||||||| ||| ||| | |||||||| |||||||| ||||| |||| ||||| |||||||||||||||||||  |||  |||||||||    
T  30863397 tgtttggagtgacttatttgagcctatttattggcataaacacttgttagactctttggtagagcttatgaaaacaacttatgacatgtacataagttgt 30863298  T
Q  671 tttcaacttattttcataagctct 694  Q
    ||||| |||| ||  |||||||||    
T  30863297 tttcagcttacttctataagctct 30863274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 611 - 668
Target Start/End: Original strand, 3181028 - 3181085
Alignment:
Q  611 cacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagtt 668  Q
    ||||||||||||||||||| |||| | ||| |||||||||||||| ||||||||||||    
T  3181028 cacttgtgagactatttgaaagagctaatgtaaacaacttatgaaatgtttataagtt 3181085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 611 - 696
Target Start/End: Original strand, 7931685 - 7931770
Alignment:
Q  611 cacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctctgt 696  Q
    |||||||||||| ||||   |||| |||||||||||||||||||  ||||  ||||||||||||| ||||||| | ||||||||||    
T  7931685 cacttgtgagaccatttagaagagcttatgaaaacaacttatgacatgttcttaagttgttttcagcttatttccgtaagctctgt 7931770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 610 - 690
Target Start/End: Complemental strand, 33498731 - 33498651
Alignment:
Q  610 acacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataag 690  Q
    |||||| ||||||| |||| ||||| |||||||||||||||||||  ||| |||| ||| |||||| ||||||| ||||||    
T  33498731 acacttctgagactttttggtagagcttatgaaaacaacttatgacatgtctataggttattttcagcttatttccataag 33498651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 636 - 688
Target Start/End: Original strand, 33832257 - 33832309
Alignment:
Q  636 ttatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcata 688  Q
    |||||||||||||||||||  ||||||||||||||||| | ||||||||||||    
T  33832257 ttatgaaaacaacttatgacatgtttataagttgtttttagcttattttcata 33832309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 616 - 686
Target Start/End: Complemental strand, 2455366 - 2455295
Alignment:
Q  616 gtgagactatttgatagagattatgaaaacaacttatga-agtgtttataagttgttttcaacttattttca 686  Q
    |||| ||||||||| |||  ||||||||||||||||| | | ||||||||||||||||||| ||||||||||    
T  2455366 gtgaaactatttgagagaacttatgaaaacaacttattacattgtttataagttgttttcagcttattttca 2455295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 621 - 683
Target Start/End: Complemental strand, 4081017 - 4080955
Alignment:
Q  621 actatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattt 683  Q
    ||||||||| |||  ||||||||||||||||||   |||| ||||||||||||||||||||||    
T  4081017 actatttgagagattttatgaaaacaacttatgccatgttcataagttgttttcaacttattt 4080955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 571 - 693
Target Start/End: Complemental strand, 33089657 - 33089535
Alignment:
Q  571 tgtttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgt 670  Q
    ||||||| || |||||||| |||||||||  || ||||   | |||||||||||||| | |||  ||||||||||| |||| ||  ||||||||||||||    
T  33089657 tgtttgggttgacttatttgagcttatctactgacatatgtatttgtgagactatttcagagaacttatgaaaacagcttaggacatgtttataagttgt 33089558  T
Q  671 tttcaacttattttcataagctc 693  Q
    |||   |||||||||||| ||||    
T  33089557 tttacgcttattttcataggctc 33089535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 636 - 689
Target Start/End: Complemental strand, 1575981 - 1575928
Alignment:
Q  636 ttatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataa 689  Q
    |||||||||||||||||||  |||| ||||| |||||| |||||||||||||||    
T  1575981 ttatgaaaacaacttatgacatgttcataagctgtttttaacttattttcataa 1575928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 582 - 675
Target Start/End: Original strand, 1669728 - 1669821
Alignment:
Q  582 acttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttca 675  Q
    ||||||||  |||||| ||||| ||||  ||||||| |||||| |||  |||| |||||||||||||||||||  ||| |||||| ||||||||    
T  1669728 acttatttgtgcttattttttgtcatatgcacttgtaagactaattgggagagcttatgaaaacaacttatgacatgtctataagctgttttca 1669821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 625 - 694
Target Start/End: Complemental strand, 9027675 - 9027606
Alignment:
Q  625 tttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    ||||| |||| ||||| ||| |||||||||  |||  |||||||||||||| ||||||||||||||||||    
T  9027675 tttgaaagagcttatggaaataacttatgacatgtccataagttgttttcagcttattttcataagctct 9027606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 636 - 689
Target Start/End: Complemental strand, 31624176 - 31624123
Alignment:
Q  636 ttatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataa 689  Q
    ||||||||||| |||||||  |||| ||||| ||||||||||||||||||||||    
T  31624176 ttatgaaaacagcttatgacatgttcataagctgttttcaacttattttcataa 31624123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 612 - 692
Target Start/End: Original strand, 8035108 - 8035188
Alignment:
Q  612 acttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagct 692  Q
    ||||| |||||||||||  |||  ||| |||||||||||||||  || | |||| ||||||||||||||||||| ||||||    
T  8035108 acttgagagactatttgggagaacttaagaaaacaacttatgacatggtcataacttgttttcaacttattttcgtaagct 8035188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 614 - 690
Target Start/End: Original strand, 20368142 - 20368218
Alignment:
Q  614 ttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataag 690  Q
    |||| ||||||||||  |||  |||||||||||||||||||  |||| ||||| |  ||||||||||||||||||||    
T  20368142 ttgtaagactatttgggagaacttatgaaaacaacttatgacatgttcataagctagtttcaacttattttcataag 20368218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 595 - 690
Target Start/End: Complemental strand, 769265 - 769170
Alignment:
Q  595 tatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataag 690  Q
    ||||| |||| ||| |||||||||||||| ||||   ||  ||||||||||| |||||||  |||| ||||| ||||||||||||| |||| ||||    
T  769265 tatctattggtataaacacttgtgagactgtttggatgaacttatgaaaacatcttatgacatgttcataagctgttttcaacttactttcttaag 769170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 661 - 692
Target Start/End: Original strand, 2023395 - 2023426
Alignment:
Q  661 tataagttgttttcaacttattttcataagct 692  Q
    ||||||||||||||||||||||||||||||||    
T  2023395 tataagttgttttcaacttattttcataagct 2023426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 635 - 694
Target Start/End: Original strand, 7945867 - 7945926
Alignment:
Q  635 attatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    |||||||||||||||||||   ||||||| ||||||||| | ||||||| ||||||||||    
T  7945867 attatgaaaacaacttatggcatgtttattagttgttttaagcttatttccataagctct 7945926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 625 - 688
Target Start/End: Complemental strand, 30604993 - 30604930
Alignment:
Q  625 tttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcata 688  Q
    ||||| |||| |||| |||||||| |||||| |||| ||||||| |||||||||||||| ||||    
T  30604993 tttgagagagcttattaaaacaacctatgaaatgttcataagttcttttcaacttatttccata 30604930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 583 - 694
Target Start/End: Original strand, 33080509 - 33080620
Alignment:
Q  583 cttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttatt 682  Q
    ||||||| ||||||| |  |||||||  ||||||||||| | ||| |||||  || ||||| ||||||||||  |||||||||||| ||||||  |||||    
T  33080509 cttatttgagcttatttactggcataagcacttgtgagattgtttaatagaatttctgaaaccaacttatgacatgtttataagttattttcagtttatt 33080608  T
Q  683 ttcataagctct 694  Q
    |  |||||||||    
T  33080609 tctataagctct 33080620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 571 - 694
Target Start/End: Complemental strand, 34404006 - 34403883
Alignment:
Q  571 tgtttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgt 670  Q
    |||||||||| |||||||| |||| ||    | ||||| |||||||| ||||| |||   |||  ||| |||||||||||||||  |||| ||||| |||    
T  34404006 tgtttggattaacttatttcagctaataaactagcataaacacttgttagactgtttaggagaagttaagaaaacaacttatgacatgttcataaggtgt 34403907  T
Q  671 tttcaacttattttcataagctct 694  Q
    ||||| ||||||| ||||||||||    
T  34403906 tttcaccttatttccataagctct 34403883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 612 - 694
Target Start/End: Original strand, 281808 - 281890
Alignment:
Q  612 acttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    |||||||||||| ||||  |||| | ||| || ||||||||||  ||| ||||||||||||||| ||||||| ||| ||||||    
T  281808 acttgtgagactgtttgggagagctaatggaagcaacttatgacatgtctataagttgttttcagcttatttccatgagctct 281890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 648 - 694
Target Start/End: Complemental strand, 6647461 - 6647415
Alignment:
Q  648 cttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    |||||||  |||| ||||| |||||||||||||||||||||||||||    
T  6647461 cttatgacatgttcataagatgttttcaacttattttcataagctct 6647415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 584 - 654
Target Start/End: Complemental strand, 27857496 - 27857426
Alignment:
Q  584 ttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatga 654  Q
    |||||| || ||||||  || ||||||||||||||| ||| ||||  |||| |||||||||||||||||||    
T  27857496 ttatttgagtttatctactgacatagacacttgtgaaactgtttgggagagcttatgaaaacaacttatga 27857426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 572 - 653
Target Start/End: Original strand, 738461 - 738542
Alignment:
Q  572 gtttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatg 653  Q
    ||||||||| |||||||| ||||||||| |||  ||| ||| |||||||| | | ||||| || ||||||||||| ||||||    
T  738461 gtttggattaacttatttgagcttatctattgagataaacatttgtgagattgtctgataaagtttatgaaaacagcttatg 738542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 641 - 694
Target Start/End: Complemental strand, 3528884 - 3528831
Alignment:
Q  641 aaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    ||||||||||||||  |||  |||| ||||||||| ||||||||||||||||||    
T  3528884 aaaacaacttatgacatgtccataacttgttttcatcttattttcataagctct 3528831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 631 - 692
Target Start/End: Complemental strand, 31421036 - 31420975
Alignment:
Q  631 agagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagct 692  Q
    |||| |||||||||||||||||    | || |||||||||||||| ||||||||||||||||    
T  31421036 agagcttatgaaaacaacttatcgcatattcataagttgttttcagcttattttcataagct 31420975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 604 - 649
Target Start/End: Complemental strand, 31668475 - 31668430
Alignment:
Q  604 gcatagacacttgtgagactatttgatagagattatgaaaacaact 649  Q
    ||||| ||||||||||||||||| || |||| ||||||||||||||    
T  31668475 gcataaacacttgtgagactattagagagagcttatgaaaacaact 31668430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 571 - 694
Target Start/End: Original strand, 27123271 - 27123394
Alignment:
Q  571 tgtttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgt 670  Q
    |||||||||| |||||||| |||||||    | |||||   |||||||||||| ||||| |||| ||||| |||||||||||||  ||| | ||||||||    
T  27123271 tgtttggattaacttatttgagcttataaactagcataagtacttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgt 27123370  T
Q  671 tttcaacttattttcataagctct 694  Q
    ||||||||||||| ||||||||||    
T  27123371 tttcaacttatttccataagctct 27123394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 571 - 694
Target Start/End: Complemental strand, 6428169 - 6428046
Alignment:
Q  571 tgtttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgt 670  Q
    |||||| ||| |||||||| ||||||| | |||| |||  ||||||||||||  ||||| ||||||||||||||||||||||||  |||  ||||||||     
T  6428169 tgtttgaattgacttatttgagcttatatattggtataagcacttgtgagacagtttgagagagattatgaaaacaacttatgacatgtccataagttga 6428070  T
Q  671 tttcaacttattttcataagctct 694  Q
    ||| | | ||||| ||||||||||    
T  6428069 tttaagcatatttccataagctct 6428046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 582 - 694
Target Start/End: Original strand, 33534099 - 33534211
Alignment:
Q  582 acttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttat 681  Q
    |||||||| |||||||||  || ||||   |||||||||| ||||||| |||| |||||||||||| || |||  | |  |||||||||||||| |||||    
T  33534099 acttatttgagcttatctagtgacataagtacttgtgagagtatttgagagagcttatgaaaacaaattgtgacatatccataagttgttttcagcttat 33534198  T
Q  682 tttcataagctct 694  Q
    |||||||||||||    
T  33534199 tttcataagctct 33534211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 611 - 694
Target Start/End: Complemental strand, 2996684 - 2996601
Alignment:
Q  611 cacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    ||||| ||||||| ||||| |||| |||||||||||||||||||  |||  ||||| | ||||||||||||||||||| |||||    
T  2996684 cacttttgagactgtttgagagagcttatgaaaacaacttatgacatgtccataagcttttttcaacttattttcatacgctct 2996601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 571 - 684
Target Start/End: Original strand, 7367973 - 7368086
Alignment:
Q  571 tgtttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgt 670  Q
    |||||||||| |||||||| || ||||||   |||||| || ||||||||||| ||||  |||| | ||||||||| |||||||  |||||||||| ||     
T  7367973 tgtttggattgacttatttgagtttatctacaggcataaacgcttgtgagactgtttgggagagctcatgaaaacagcttatgacatgtttataagctgc 7368072  T
Q  671 tttcaacttatttt 684  Q
    ||||||| ||||||    
T  7368073 tttcaacatatttt 7368086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 585 - 657
Target Start/End: Original strand, 18628486 - 18628558
Alignment:
Q  585 tatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagt 657  Q
    ||||| |||||||||  || |||| |||||||||||||| ||||  |||| ||||||||||||||||||||||    
T  18628486 tatttgagcttatctactgacataaacacttgtgagactgtttgggagagcttatgaaaacaacttatgaagt 18628558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 636 - 694
Target Start/End: Original strand, 28300283 - 28300341
Alignment:
Q  636 ttatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    ||||||||||| | |||||  ||||  ||||||||||||||||||||||||||||||||    
T  28300283 ttatgaaaacagcctatgacatgttcttaagttgttttcaacttattttcataagctct 28300341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 584 - 690
Target Start/End: Complemental strand, 44320087 - 44319981
Alignment:
Q  584 ttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattt 683  Q
    |||||| |||||| || |||||||| ||| |||||||||| ||||  |||| |||||||||||| |||||| || |  || || | ||||||||| ||||    
T  44320087 ttatttgagcttacctattggcataaacaattgtgagactgtttgggagagcttatgaaaacaaattatgatgtatccattagctattttcaactaattt 44319988  T
Q  684 tcataag 690  Q
    |||||||    
T  44319987 tcataag 44319981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 612 - 694
Target Start/End: Original strand, 46019589 - 46019671
Alignment:
Q  612 acttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    |||||||||| | | ||| |||| |||| || | |||||||||  |||| |||||||||||||||||||| ||||||||||||    
T  46019589 acttgtgagattgtctgaaagagtttataaacagaacttatgacatgttgataagttgttttcaacttatattcataagctct 46019671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 604 - 694
Target Start/End: Complemental strand, 46247323 - 46247233
Alignment:
Q  604 gcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    ||||| |||||||||||| | | ||| |||  ||||||||| |||||||||  |||| ||||||||| |||||||||| ||| ||||||||    
T  46247323 gcataaacacttgtgagattgtctgagagatcttatgaaaagaacttatgacatgttgataagttgtcttcaacttatattcttaagctct 46247233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 662 - 695
Target Start/End: Original strand, 25548138 - 25548171
Alignment:
Q  662 ataagttgttttcaacttattttcataagctctg 695  Q
    ||||||||||||||||||||||||||||||||||    
T  25548138 ataagttgttttcaacttattttcataagctctg 25548171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 611 - 675
Target Start/End: Complemental strand, 4071989 - 4071925
Alignment:
Q  611 cacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttca 675  Q
    ||||||||||||| ||||| |||| ||||||||||| |||||||  ||||  |||||||||||||    
T  4071989 cacttgtgagactgtttgagagagcttatgaaaacagcttatgatttgttggtaagttgttttca 4071925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 582 - 689
Target Start/End: Original strand, 3176034 - 3176141
Alignment:
Q  582 acttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttat 681  Q
    |||||||  ||||||| | |||||| | |||||||||| ||| |||   |||| ||||||||||| ||||||   ||| ||||||||||||||| |||||    
T  3176034 acttattcgagcttatatgttggcacaaacacttgtgaaactgtttaggagagcttatgaaaacatcttatgtcatgtctataagttgttttcagcttat 3176133  T
Q  682 tttcataa 689  Q
    || |||||    
T  3176134 ttccataa 3176141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 611 - 690
Target Start/End: Complemental strand, 4691959 - 4691880
Alignment:
Q  611 cacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataag 690  Q
    ||||||||||||||||||| | |  ||||| |||||||||||||  ||   ||| |||||||||| ||||||||||||||    
T  4691959 cacttgtgagactatttgagaaaacttatggaaacaacttatgacatgcccatatgttgttttcagcttattttcataag 4691880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 611 - 694
Target Start/End: Complemental strand, 28232656 - 28232573
Alignment:
Q  611 cacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    |||||| |||||| ||||  |||| || || |||||||||||||  | ||||||||||||||||| ||||||| || |||||||    
T  28232656 cacttgcgagactgtttggaagagcttgtggaaacaacttatgacttatttataagttgttttcatcttatttccacaagctct 28232573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 636 - 694
Target Start/End: Complemental strand, 1137798 - 1137740
Alignment:
Q  636 ttatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    ||||||||||| |||||||  |||| ||||||||||||||  |||||| ||||||||||    
T  1137798 ttatgaaaacatcttatgacatgttcataagttgttttcagtttatttccataagctct 1137740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 657 - 687
Target Start/End: Complemental strand, 20907412 - 20907382
Alignment:
Q  657 tgtttataagttgttttcaacttattttcat 687  Q
    |||||||||||||||||||||||||||||||    
T  20907412 tgtttataagttgttttcaacttattttcat 20907382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 636 - 694
Target Start/End: Original strand, 20936213 - 20936271
Alignment:
Q  636 ttatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    |||||||||||||||||||  |||| ||||| |||||||| ||||||| ||||| ||||    
T  20936213 ttatgaaaacaacttatgatatgttcataagctgttttcaccttatttccataatctct 20936271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 570 - 620
Target Start/End: Complemental strand, 24193684 - 24193634
Alignment:
Q  570 gtgtttggattcacttatttaagcttatcttttggcatagacacttgtgag 620  Q
    ||||||||||| |||||||| |||||||||  ||||||| |||||||||||    
T  24193684 gtgtttggattgacttatttgagcttatctcctggcataaacacttgtgag 24193634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 612 - 694
Target Start/End: Complemental strand, 25497666 - 25497584
Alignment:
Q  612 acttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    |||||||||||  |||| || || ||||||||| | |||||||||||| ||||||| |||||| ||| ||||  |||||||||    
T  25497666 acttgtgagacagtttggtaaagcttatgaaaatatcttatgaagtgtatataagtcgttttcgactgatttctataagctct 25497584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 604 - 694
Target Start/End: Original strand, 46013265 - 46013355
Alignment:
Q  604 gcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    ||||| |||||||||||| | | ||| |||  ||||||||| ||||||||   |||| ||||||||| |||||||||| ||| ||||||||    
T  46013265 gcataaacacttgtgagattgtctgagagatcttatgaaaagaacttatggcatgttgataagttgtcttcaacttatattcttaagctct 46013355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 712 - 758
Target Start/End: Original strand, 50875155 - 50875201
Alignment:
Q  712 cgacacttctgattaaaggcgtgtctggtgttcgatatgtgtcggtg 758  Q
    ||||||||||||| |||||||||| |||||| ||| |||||||||||    
T  50875155 cgacacttctgatcaaaggcgtgtttggtgtccgacatgtgtcggtg 50875201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 656 - 694
Target Start/End: Complemental strand, 52259697 - 52259659
Alignment:
Q  656 gtgtttataagttgttttcaacttattttcataagctct 694  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  52259697 gtgtttataagctattttcaacttattttcataagctct 52259659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 571 - 694
Target Start/End: Complemental strand, 679865 - 679746
Alignment:
Q  571 tgtttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgt 670  Q
    |||||||||| ||| |||| |||||||||   || |||  |||||| ||||||| ||| ||||  ||||||||||| |||||||  |||| ||||  |||    
T  679865 tgtttggattgactaatttgagcttatct---ggtataagcacttg-gagactacttggtagaagttatgaaaacatcttatgatatgttcataaactgt 679770  T
Q  671 tttcaacttattttcataagctct 694  Q
    ||||| | ||||||||||||||||    
T  679769 tttcagcatattttcataagctct 679746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 692 - 749
Target Start/End: Complemental strand, 39765643 - 39765586
Alignment:
Q  692 tctgtggtactcagaagcaccgacacttctgattaaaggcgtgtctggtgttcgatat 749  Q
    ||||||||| |||| |||||| ||||||| |||  |||||||||||||||| ||||||    
T  39765643 tctgtggtattcagtagcaccaacacttccgatcgaaggcgtgtctggtgtacgatat 39765586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 611 - 692
Target Start/End: Complemental strand, 42461362 - 42461281
Alignment:
Q  611 cacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagct 692  Q
    ||||| ||||||| ||||  |||  ||||||||| | | ||||| ||||| |||||||| ||||| ||||||||||||||||    
T  42461362 cacttatgagactgtttgggagaacttatgaaaatagcctatgacgtgttcataagttgatttcagcttattttcataagct 42461281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 657 - 694
Target Start/End: Complemental strand, 47146027 - 47145990
Alignment:
Q  657 tgtttataagttgttttcaacttattttcataagctct 694  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  47146027 tgttcataagttgttttcaccttattttcataagctct 47145990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 611 - 694
Target Start/End: Complemental strand, 47800731 - 47800651
Alignment:
Q  611 cacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    |||||| |||||| ||||| ||  |||||||||||| |||||    ||||||||||  ||||||| ||||||||||||||||||    
T  47800731 cacttgcgagactgtttgagagtaattatgaaaacagcttata---tgtttataagcggttttcagcttattttcataagctct 47800651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 571 - 691
Target Start/End: Original strand, 11297115 - 11297235
Alignment:
Q  571 tgtttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgt 670  Q
    |||||| ||| ||||||||||||||||||  ||||||| |||||||| ||||| ||||| |||| ||||| |||||||||| ||  |||  || || | |    
T  11297115 tgtttgaattgacttatttaagcttatctagtggcataaacacttgtaagactgtttgaaagagcttatggaaacaacttaagacatgtcaattagctat 11297214  T
Q  671 tttcaacttattttcataagc 691  Q
    ||||| |||||||||||||||    
T  11297215 tttcagcttattttcataagc 11297235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 618 - 694
Target Start/End: Complemental strand, 8090040 - 8089964
Alignment:
Q  618 gagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    |||||||||||| |||| |||||||||||||||||||  | ||  |||| |||||||| ||||||||||||||||||    
T  8090040 gagactatttgagagagcttatgaaaacaacttatgatatattcctaagctgttttcagcttattttcataagctct 8089964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 610 - 694
Target Start/End: Complemental strand, 6593411 - 6593327
Alignment:
Q  610 acacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    |||||||||||||||||||  |||  ||||||||||| ||| ||| ||||| | ||| | |||||| ||||||||||||||||||    
T  6593411 acacttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaacaagctcttttcagcttattttcataagctct 6593327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 583 - 683
Target Start/End: Complemental strand, 10391481 - 10391381
Alignment:
Q  583 cttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttatt 682  Q
    |||||||||||||||||  |||||||  ||||||||||| | ||||  |||| |||| ||||||  ||||||  ||| ||| ||||||||||||||||||    
T  10391481 cttatttaagcttatctgctggcataatcacttgtgagattgtttggaagagtttataaaaacactttatgacatgtctattagttgttttcaacttatt 10391382  T
Q  683 t 683  Q
    |    
T  10391381 t 10391381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 571 - 695
Target Start/End: Original strand, 12459920 - 12460044
Alignment:
Q  571 tgtttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgt 670  Q
    |||||||||| ||||||||  ||||||||  || ||||  ||| ||||||||| ||||  |||   ||||||||||||||||||  |||| ||| |||||    
T  12459920 tgtttggattgacttatttcggcttatctgctgacataagcacctgtgagactgtttgggagaacctatgaaaacaacttatgacatgttcatatgttgt 12460019  T
Q  671 tttcaacttattttcataagctctg 695  Q
    |||   |||||||||||||||||||    
T  12460020 ttttggcttattttcataagctctg 12460044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 583 - 694
Target Start/End: Original strand, 10125649 - 10125760
Alignment:
Q  583 cttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttatt 682  Q
    |||||||||||||||||  || |||   ||||||||| | | | ||| |||  ||||| |||||||||||||  |||| ||||| |||||||| ||||||    
T  10125649 cttatttaagcttatctactgacatgagcacttgtgacattgtctgagagaacttatgtaaacaacttatgacatgttgataaggtgttttcagcttatt 10125748  T
Q  683 ttcataagctct 694  Q
    ||||||||||||    
T  10125749 ttcataagctct 10125760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 631 - 694
Target Start/End: Original strand, 13604828 - 13604891
Alignment:
Q  631 agagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    |||| ||||||||||| |||||||  |||  ||| |||||||||||||||||||||||||||||    
T  13604828 agagcttatgaaaacagcttatgacatgtccatacgttgttttcaacttattttcataagctct 13604891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 584 - 682
Target Start/End: Original strand, 4273309 - 4273407
Alignment:
Q  584 ttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttatt 682  Q
    |||||| ||||| ||| |||||||| ||| |||||||| | ||||| |||   |||| ||||| |||||||  ||| ||||||||||||||||||||||    
T  4273309 ttattttagcttgtctattggcataaacatttgtgagattgtttgagagaacctatggaaacagcttatgacttgtctataagttgttttcaacttatt 4273407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 612 - 694
Target Start/End: Original strand, 37611175 - 37611257
Alignment:
Q  612 acttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    |||||||||| | ||||| |||| ||||||||||||||| |||  |||| ||||| ||||||||  |||||| ||||||||||    
T  37611175 acttgtgagattgtttgagagagcttatgaaaacaacttgtgacatgttcataagctgttttcaggttatttccataagctct 37611257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 612 - 694
Target Start/End: Original strand, 37787905 - 37787987
Alignment:
Q  612 acttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    |||||||||| | ||||| |||| ||||||||||||||| |||  |||| ||||| ||||||||  |||||| ||||||||||    
T  37787905 acttgtgagattgtttgagagagcttatgaaaacaacttgtgacatgttcataagctgttttcaggttatttccataagctct 37787987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 643 - 692
Target Start/End: Complemental strand, 12467212 - 12467163
Alignment:
Q  643 aacaacttatgaagtgtttataagttgttttcaacttattttcataagct 692  Q
    ||||||||||||  |||||||||| |||||||| ||||||||||||||||    
T  12467212 aacaacttatgacatgtttataagctgttttcagcttattttcataagct 12467163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 582 - 654
Target Start/End: Complemental strand, 11457238 - 11457166
Alignment:
Q  582 acttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatga 654  Q
    |||||||| ||||||||| |||||| | |||||||||||||| |||   |||| ||||| |||||||||||||    
T  11457238 acttatttgagcttatctattggcagaaacacttgtgagactgttttgaagagcttatggaaacaacttatga 11457166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 662 - 694
Target Start/End: Complemental strand, 31694578 - 31694546
Alignment:
Q  662 ataagttgttttcaacttattttcataagctct 694  Q
    |||||||||||||||||||||||||||||||||    
T  31694578 ataagttgttttcaacttattttcataagctct 31694546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 571 - 693
Target Start/End: Original strand, 8651271 - 8651394
Alignment:
Q  571 tgtttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaag-tgtttataagttg 669  Q
    ||||||||||  ||||||| |||||||||| | ||||| ||||| |||||| |||| |  |||| ||||| ||||| ||||| ||  |||  ||||||||    
T  8651271 tgtttggattgccttatttgagcttatcttctagcataaacactcgtgagagtattcggaagagcttatggaaacagcttataaacatgtccataagttg 8651370  T
Q  670 ttttcaacttattttcataagctc 693  Q
    |||||| | ||||| |||||||||    
T  8651371 ttttcagcatatttccataagctc 8651394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 611 - 694
Target Start/End: Original strand, 10272390 - 10272473
Alignment:
Q  611 cacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    |||||||| |||||||||  || | ||||  |||||||||||||  ||| | ||||||||||||| ||||||||||||| ||||    
T  10272390 cacttgtgtgactatttgggagtgcttatagaaacaacttatgacatgtctgtaagttgttttcagcttattttcataaactct 10272473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 584 - 694
Target Start/End: Complemental strand, 6109621 - 6109511
Alignment:
Q  584 ttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattt 683  Q
    |||||| || || ||| |||||||| |||||||||||| |||||   |||| ||||| ||| || ||||||  |||  |||||||||||||| |||||||    
T  6109621 ttatttgagtttgtctattggcataaacacttgtgagaatattttggagagcttatggaaaaaaattatgatatgtccataagttgttttcagcttattt 6109522  T
Q  684 tcataagctct 694  Q
     || |||||||    
T  6109521 ccaaaagctct 6109511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 636 - 686
Target Start/End: Complemental strand, 7674734 - 7674684
Alignment:
Q  636 ttatgaaaacaacttatgaagtgtttataagttgttttcaacttattttca 686  Q
    ||||| |||||||||||||  |||||||||| |||||||| ||||||||||    
T  7674734 ttatggaaacaacttatgacatgtttataaggtgttttcagcttattttca 7674684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 605 - 694
Target Start/End: Complemental strand, 7907999 - 7907909
Alignment:
Q  605 catagacacttgtgagactatttgatagagattatgaaaacaactta-tgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    |||| |||||| ||||||| ||||  |||  ||||||||||||| || |||| | || |||||||||||||| |||| |||||||||||||    
T  7907999 cataaacacttatgagactgtttggaagaacttatgaaaacaacgtactgaaatattcataagttgttttcagcttaatttcataagctct 7907909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 636 - 694
Target Start/End: Complemental strand, 36578561 - 36578503
Alignment:
Q  636 ttatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    ||||||||||||||||| |  ||||||| |||| ||||||| |||||||||||| ||||    
T  36578561 ttatgaaaacaacttataatatgtttattagttattttcaatttattttcataaactct 36578503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 571 - 628
Target Start/End: Original strand, 3734608 - 3734665
Alignment:
Q  571 tgtttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttg 628  Q
    |||||||||| ||||||||||| |||||| |||||||  | |||||| ||||||||||    
T  3734608 tgtttggattgacttatttaagattatctattggcattaatacttgtaagactatttg 3734665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 665 - 694
Target Start/End: Complemental strand, 10296468 - 10296439
Alignment:
Q  665 agttgttttcaacttattttcataagctct 694  Q
    ||||||||||||||||||||||||||||||    
T  10296468 agttgttttcaacttattttcataagctct 10296439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 577 - 654
Target Start/End: Original strand, 11296924 - 11297001
Alignment:
Q  577 gattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatga 654  Q
    |||| ||||||||||||||||||   |||| | ||| ||  |||||||||||  |||| |||||||||||||||||||    
T  11296924 gattgacttatttaagcttatctaggggcaaaaacatttacgagactatttggaagagcttatgaaaacaacttatga 11297001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 657 - 694
Target Start/End: Complemental strand, 11707120 - 11707083
Alignment:
Q  657 tgtttataagttgttttcaacttattttcataagctct 694  Q
    ||||||||||||||||||| |||||||||| |||||||    
T  11707120 tgtttataagttgttttcagcttattttcaaaagctct 11707083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 694
Target Start/End: Original strand, 17258868 - 17258925
Alignment:
Q  637 tatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    |||||||| | |||||||  |||| ||||| |||||||| ||||||||||||||||||    
T  17258868 tatgaaaatagcttatgacatgttcataagctgttttcagcttattttcataagctct 17258925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 582 - 694
Target Start/End: Original strand, 25670516 - 25670628
Alignment:
Q  582 acttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttat 681  Q
    ||||| || ||||||||| ||| ||||  | ||||||||||| ||||| | |  |||||||||||||||||||  |||| |||| ||||||||| |||||    
T  25670516 acttacttgagcttatctattgacataagctcttgtgagactgtttgagaaaacttatgaaaacaacttatgacatgttaataaattgttttcagcttat 25670615  T
Q  682 tttcataagctct 694  Q
    ||||| |||||||    
T  25670616 tttcacaagctct 25670628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 605 - 694
Target Start/End: Original strand, 22387849 - 22387938
Alignment:
Q  605 catagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    |||| |||| ||||||||| ||||  |||| ||||||||||||||||||   |||||||||  |||||| ||||||||| ||||||||||    
T  22387849 cataaacacgtgtgagactgtttgggagagcttatgaaaacaacttatggcatgtttataaactgtttttaacttatttccataagctct 22387938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 583 - 666
Target Start/End: Complemental strand, 8094445 - 8094362
Alignment:
Q  583 cttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataag 666  Q
    ||||||| |||||||||  | |||||  ||||||||||||||||||| |||  ||||||||||| |||||||  ||||||||||    
T  8094445 cttatttgagcttatctactagcataagcacttgtgagactatttgagagattttatgaaaacagcttatgacatgtttataag 8094362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 571 - 654
Target Start/End: Complemental strand, 23215006 - 23214923
Alignment:
Q  571 tgtttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatga 654  Q
    |||||||||| |||||||| | |||||||  | ||||| |||||| ||||||| ||||| |||  |||||||||||||||||||    
T  23215006 tgtttggattgacttatttgaccttatctactagcataaacacttatgagactgtttgagagaatttatgaaaacaacttatga 23214923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 631 - 694
Target Start/End: Complemental strand, 46082127 - 46082064
Alignment:
Q  631 agagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    |||| |||||||||||||||||||  ||   |||||||||||||| ||||||||||||||||||    
T  46082127 agagcttatgaaaacaacttatgacatgaccataagttgttttcagcttattttcataagctct 46082064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 636 - 689
Target Start/End: Original strand, 15740395 - 15740448
Alignment:
Q  636 ttatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataa 689  Q
    |||||||||||||||||||  |||| ||||| |||||| |||||||||||||||    
T  15740395 ttatgaaaacaacttatgacatgttcataagctgtttttaacttattttcataa 15740448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 636 - 685
Target Start/End: Complemental strand, 30317048 - 30316999
Alignment:
Q  636 ttatgaaaacaacttatgaagtgtttataagttgttttcaacttattttc 685  Q
    ||||||||||||||||| || |||| ||||| ||||||||||||||||||    
T  30317048 ttatgaaaacaacttataaaatgttaataagctgttttcaacttattttc 30316999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 571 - 683
Target Start/End: Complemental strand, 33894778 - 33894666
Alignment:
Q  571 tgtttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgt 670  Q
    ||||||||||  ||||||| ||||||||   || ||||  ||||||||||||| ||||  |||| ||||||||||| | |||||  |||  |||||||||    
T  33894778 tgtttggattagcttatttgagcttatcaaatgacataagcacttgtgagactgtttgtgagagcttatgaaaacagcatatgacatgtccataagttgt 33894679  T
Q  671 tttcaacttattt 683  Q
    ||||| |||||||    
T  33894678 tttcagcttattt 33894666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 614 - 685
Target Start/End: Complemental strand, 34036026 - 34035954
Alignment:
Q  614 ttgtgagactatttgatagagattatgaaaacaacttatga-agtgtttataagttgttttcaacttattttc 685  Q
    ||||||||||| |||  |||  ||||||||| ||||||||| | |||| ||||||||||||||||||||||||    
T  34036026 ttgtgagactacttggaagaacttatgaaaataacttatgacattgttcataagttgttttcaacttattttc 34035954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 582 - 694
Target Start/End: Original strand, 34754740 - 34754852
Alignment:
Q  582 acttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttat 681  Q
    |||| ||| ||||||||| ||| || | |||||| ||||||| ||||| |||| ||| ||||||| |||||||   |  ||||||||||||||| |||||    
T  34754740 acttgtttgagcttatctattgacacaaacacttatgagactgtttgagagagcttaagaaaacatcttatgacaagcctataagttgttttcagcttat 34754839  T
Q  682 tttcataagctct 694  Q
    || ||| ||||||    
T  34754840 ttccatcagctct 34754852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 583 - 691
Target Start/End: Complemental strand, 44808297 - 44808189
Alignment:
Q  583 cttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttatt 682  Q
    ||||||| ||||||| | || |||||  || |||| ||||| |||||||||  ||||||||| |||||||||  |||  ||||  |||||||| ||||||    
T  44808297 cttatttgagcttatttattagcataagcagttgtcagactgtttgatagaccttatgaaaataacttatgacatgtccataacctgttttcagcttatt 44808198  T
Q  683 ttcataagc 691  Q
    |||||||||    
T  44808197 ttcataagc 44808189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 571 - 694
Target Start/End: Complemental strand, 1423040 - 1422917
Alignment:
Q  571 tgtttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgt 670  Q
    ||||| |||| |||||||| ||  | ||| |||| |||||||||| ||||| | ||| | |||| ||||||||| |  ||||||   || ||||| ||||    
T  1423040 tgtttagattgacttatttgagtctctctattggtatagacacttatgagattgtttaagagagcttatgaaaatagtttatgacaagtctataaattgt 1422941  T
Q  671 tttcaacttattttcataagctct 694  Q
    |||||| |||||||||||||||||    
T  1422940 tttcaatttattttcataagctct 1422917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 636 - 690
Target Start/End: Original strand, 19022568 - 19022623
Alignment:
Q  636 ttatgaaaacaacttatga-agtgtttataagttgttttcaacttattttcataag 690  Q
    ||||||||||||||||||| | | || ||||||||| |||||||||||||||||||    
T  19022568 ttatgaaaacaacttatgacaattttcataagttgtcttcaacttattttcataag 19022623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 663 - 694
Target Start/End: Complemental strand, 25596092 - 25596061
Alignment:
Q  663 taagttgttttcaacttattttcataagctct 694  Q
    ||||||||||||||||||||||||||||||||    
T  25596092 taagttgttttcaacttattttcataagctct 25596061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 603 - 686
Target Start/End: Complemental strand, 36538027 - 36537944
Alignment:
Q  603 ggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttca 686  Q
    |||||| |||||||||||| | ||||| |||  ||||| |||||||||||||  |||| |||||||||||| | ||| ||||||    
T  36538027 ggcataaacacttgtgagattgtttgagagaacttatggaaacaacttatgacatgttcataagttgtttttagctttttttca 36537944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 573 - 644
Target Start/End: Original strand, 44289964 - 44290035
Alignment:
Q  573 tttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaa 644  Q
    |||| ||| |||||||| |||||||||  ||||||||||||| |||||||||||  | |||| |||||||||    
T  44289964 tttgcattgacttatttgagcttatctagtggcatagacactggtgagactattcaagagagtttatgaaaa 44290035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 574 - 628
Target Start/End: Complemental strand, 529510 - 529456
Alignment:
Q  574 ttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttg 628  Q
    ||||||| |||||||| |||||||||  ||||||| ||||||||||| |||||||    
T  529510 ttggattgacttatttgagcttatctactggcataaacacttgtgaggctatttg 529456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 573 - 683
Target Start/End: Original strand, 28727684 - 28727794
Alignment:
Q  573 tttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttt 672  Q
    |||||||| |||||||| ||||||||||||| | ||   ||||| |||||| ||||| |||| ||||| ||||  |||||||  ||||  || |||||||    
T  28727684 tttggattaacttatttgagcttatcttttgacctaagaacttgcgagactgtttgagagagcttatggaaacggcttatgacatgttcgtatgttgttt 28727783  T
Q  673 tcaacttattt 683  Q
    ||| |||||||    
T  28727784 tcagcttattt 28727794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 640 - 690
Target Start/End: Complemental strand, 44822041 - 44821991
Alignment:
Q  640 gaaaacaacttatgaagtgtttataagttgttttcaacttattttcataag 690  Q
    ||||||||||||  || |||  |||||||||||||||||||||||||||||    
T  44822041 gaaaacaacttaaaaaatgtcaataagttgttttcaacttattttcataag 44821991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 625 - 694
Target Start/End: Complemental strand, 7244777 - 7244708
Alignment:
Q  625 tttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctct 694  Q
    ||||| |||| | ||| |||||| ||||||  || | |||||||||||||| ||||||||||||||||||    
T  7244777 tttgaaagagctgatggaaacaatttatgacatgctcataagttgttttcagcttattttcataagctct 7244708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 573 - 694
Target Start/End: Original strand, 12234810 - 12234931
Alignment:
Q  573 tttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttt 672  Q
    |||||||| ||||| || |||||||||  ||||||   ||| |||||||||  |||  | || ||||  |||||||||||||  ||| |||||| |||||    
T  12234810 tttggattgacttagttgagcttatctactggcattagcacgtgtgagactgcttggaatagcttatagaaacaacttatgacatgtctataagctgttt 12234909  T
Q  673 tcaacttattttcataagctct 694  Q
    ||| ||||||| ||||||||||    
T  12234910 tcagcttatttccataagctct 12234931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 614 - 690
Target Start/End: Original strand, 20526890 - 20526967
Alignment:
Q  614 ttgtgagactatttgatagagattatgaaaacaacttatga-agtgtttataagttgttttcaacttattttcataag 690  Q
    |||||||||| ||||| |||  | ||||||||| ||||||| | |||||||||| | |||||| ||||||||||||||    
T  20526890 ttgtgagactgtttgagagaactgatgaaaacagcttatgagattgtttataagatcttttcagcttattttcataag 20526967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 665 - 694
Target Start/End: Complemental strand, 22204525 - 22204496
Alignment:
Q  665 agttgttttcaacttattttcataagctct 694  Q
    ||||||||||||||||||||||||||||||    
T  22204525 agttgttttcaacttattttcataagctct 22204496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 665 - 694
Target Start/End: Original strand, 22230214 - 22230243
Alignment:
Q  665 agttgttttcaacttattttcataagctct 694  Q
    ||||||||||||||||||||||||||||||    
T  22230214 agttgttttcaacttattttcataagctct 22230243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 616 - 693
Target Start/End: Complemental strand, 39360129 - 39360052
Alignment:
Q  616 gtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataagctc 693  Q
    |||||||| |||||||||| ||||| |||||||||||||  | |  |||||||| ||||| |||||||  ||||||||    
T  39360129 gtgagactgtttgatagagtttatggaaacaacttatgacatatccataagttgctttcagcttatttcaataagctc 39360052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 657 - 694
Target Start/End: Original strand, 47395103 - 47395140
Alignment:
Q  657 tgtttataagttgttttcaacttattttcataagctct 694  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  47395103 tgtttataagttgttttcaacttatttccataggctct 47395140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 571 - 654
Target Start/End: Complemental strand, 6697 - 6614
Alignment:
Q  571 tgtttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatga 654  Q
    |||||||||| |||||||| ||||||| | |||| |||  ||||||||||||  ||||| ||||||||||||||||| ||||||    
T  6697 tgtttggattgacttatttgagcttatatattggtataatcacttgtgagacagtttgagagagattatgaaaacaagttatga 6614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 571 - 654
Target Start/End: Complemental strand, 6695 - 6612
Alignment:
Q  571 tgtttggattcacttatttaagcttatcttttggcatagacacttgtgagactatttgatagagattatgaaaacaacttatga 654  Q
    |||||||||| |||||||| ||||||| | |||| |||  ||||||||||||  ||||| ||||||||||||||||| ||||||    
T  6695 tgtttggattgacttatttgagcttatatattggtataatcacttgtgagacagtttgagagagattatgaaaacaagttatga 6612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 612 - 689
Target Start/End: Original strand, 10577 - 10654
Alignment:
Q  612 acttgtgagactatttgatagagattatgaaaacaacttatgaagtgtttataagttgttttcaacttattttcataa 689  Q
    |||||||||||| ||||| | || ||||| |||||||| ||||  |||  |||||||||||||| ||||||| |||||    
T  10577 acttgtgagactgtttgacaaagcttatgtaaacaactaatgacatgtccataagttgttttcagcttatttccataa 10654  T

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