View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20070_low_23 (Length: 324)

Name: NF20070_low_23
Description: NF20070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20070_low_23
NF20070_low_23
[»] chr7 (5 HSPs)
chr7 (236-321)||(6238170-6238259)
chr7 (257-321)||(6208994-6209062)
chr7 (236-318)||(6213752-6213837)
chr7 (108-148)||(6238227-6238267)
chr7 (106-148)||(6213805-6213847)


Alignment Details
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 236 - 321
Target Start/End: Complemental strand, 6238259 - 6238170
Alignment:
Q  236 tatataagatcagtaaacaatttaaacgcttaaatgattaagcttt----atctaacatgacaaacacaatggagcaggtgtgaacggta 321  Q
    ||||||| | ||||||||||||||||| ||||||||||||||||||    || |||||||||||||||||||||||||||||||| ||||    
T  6238259 tatataaaaccagtaaacaatttaaacacttaaatgattaagcttttattatgtaacatgacaaacacaatggagcaggtgtgaatggta 6238170  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 257 - 321
Target Start/End: Complemental strand, 6209062 - 6208994
Alignment:
Q  257 ttaaacgcttaaatgattaagcttt----atctaacatgacaaacacaatggagcaggtgtgaacggta 321  Q
    |||||| ||||||||||||||||||    || |||||||||||||||||||||||||||||||||||||    
T  6209062 ttaaacacttaaatgattaagcttttattatgtaacatgacaaacacaatggagcaggtgtgaacggta 6208994  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 236 - 318
Target Start/End: Complemental strand, 6213837 - 6213752
Alignment:
Q  236 tatataagatcagtaaacaatttaaacgcttaaatgattaagct----ttatctaacatgacaaacacaatggagcaggtgtgaacg 318  Q
    ||||||| | ||||||||||||||||| ||||||||||||| ||    |||| ||||||||| ||||||||||||||||||||||||    
T  6213837 tatataaaaccagtaaacaatttaaacacttaaatgattaaacttttattatgtaacatgac-aacacaatggagcaggtgtgaacg 6213752  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 6238267 - 6238227
Alignment:
Q  108 ttatcccatatctaaaaccagtaaacaatttaaacacttaa 148  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  6238267 ttatcccatatataaaaccagtaaacaatttaaacacttaa 6238227  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 148
Target Start/End: Complemental strand, 6213847 - 6213805
Alignment:
Q  106 tgttatcccatatctaaaaccagtaaacaatttaaacacttaa 148  Q
    |||||||  |||| |||||||||||||||||||||||||||||    
T  6213847 tgttatctaatatataaaaccagtaaacaatttaaacacttaa 6213805  T

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