View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20070_low_24 (Length: 320)
Name: NF20070_low_24
Description: NF20070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20070_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 11 - 302
Target Start/End: Original strand, 52066423 - 52066714
Alignment:
| Q |
11 |
cacagaatggctgagaatttatgttcaatataatgagaagaaagaatacacggccttttaatttatatggtactgagtgcaggttttgagcacaatgttt |
110 |
Q |
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| T |
52066423 |
cacagaatggctgagaatttatgttcaatataatgagaagaaagaatacacggccttttaatttatatggcactgagtgcaggttttgagcacaatgttt |
52066522 |
T |
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| Q |
111 |
ggataaaacagtttgtgttcatgttgtgataacttaatagtaatactctgtaatgtgccagcagatattggatagtatacttgaggacttatatatatgt |
210 |
Q |
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| T |
52066523 |
ggataaaacagtttgtgttcatgttgtgataacttaatagtaatactctgtaatgtgccagcagatattggatagtatacttgaggacttatatatatgt |
52066622 |
T |
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| Q |
211 |
tggttttattagtttcctttgaactagagacaaagcattctttaaatctctttacttagtcgtcacatttgtttggtgcatatagtgcatta |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52066623 |
tggttttattagtttcctttgaactagagacaaagcattctttaaatctctttacttagtcgtcacatttgtttggtgcatatagtgcatta |
52066714 |
T |
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