View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20070_low_25 (Length: 298)
Name: NF20070_low_25
Description: NF20070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20070_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 36 - 282
Target Start/End: Complemental strand, 44896698 - 44896451
Alignment:
| Q |
36 |
aatccaaaacttcacttcaatgatctaattttaagataccaaacaactaatcatgcctaccatggttgttttaatagtttgcctcagcaaacacatgtca |
135 |
Q |
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| T |
44896698 |
aatccaaaagttcacttcaatgatcttattttaagatcacaaacaactaatcatgcataccatggttggtttaaaagtttgactaagcaaacaaatgtca |
44896599 |
T |
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| Q |
136 |
ttttactcttttaaactcaattnnnnnnnttgtaataattgttattttattaaacggagaaaattagtaatcaaaatggttttccaactttattaatgca |
235 |
Q |
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| T |
44896598 |
ttttagtcttttaaactcaatgaaaaaaattgtaataattgttattttattaaacggagaaaattagtaatcaaaatggttttccaactttattaatgca |
44896499 |
T |
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| Q |
236 |
aagtaaactgaacaagataattaa-aaaatatcattaatatcactttt |
282 |
Q |
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| T |
44896498 |
aagtaaactgaacaagataattaaaaaaatatcattaatatcactttt |
44896451 |
T |
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