View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20070_low_27 (Length: 289)
Name: NF20070_low_27
Description: NF20070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20070_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 56282392 - 56282661
Alignment:
| Q |
1 |
ttcgttttgatatctcaactccattatcaaaagtgagcactttccattcatcattgtttgagtttactctgtttgtgtccgaagctgctagtaactcttg |
100 |
Q |
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| T |
56282392 |
ttcgttttgatatctcaactccattatcaaaagtgagcactttccattcatcattgtttgagtttcctctgtttgtgtccgaagctgctagtaactcttg |
56282491 |
T |
|
| Q |
101 |
tatgcaactttcacttgcaaactgtacataccttttaagagagtcctcactaattgacctttacaagaagaaattcatcatcatcacttcaacaattata |
200 |
Q |
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| T |
56282492 |
tatgcaactttcacttgcaaactgtacataccttttaagagagtcctcactaattgacctttaaaagaagaaattcatcatcatcacttcaacaattata |
56282591 |
T |
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| Q |
201 |
tatgaaaacaaacatttaattgattgaaatggttggtatttaatttagcactcaccaagatcggctgcaag |
271 |
Q |
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| T |
56282592 |
tatgaacac-aacatttaattgattgaaatggttgatatttaatttagcactcaccaagatcggctgcaag |
56282661 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 38476870 - 38476927
Alignment:
| Q |
4 |
gttttgatatctcaactccattatcaaaa--gtgagcactttccattcatcattgttt |
59 |
Q |
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| T |
38476870 |
gttttgatatctcaactcaattatcaaaagtgtgaccactttccattaatcattgttt |
38476927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 34572132 - 34572209
Alignment:
| Q |
57 |
tttgagtttactctgtttgtgtccgaagctgctagtaactcttgtatgcaactttcacttgcaaactgtacatacctt |
134 |
Q |
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|||| |||| ||||||||||||| ||||| ||| |||||||||||||||| |||| | || ||||| ||||||||| |
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| T |
34572132 |
tttgtgtttcctctgtttgtgtcataagcttctaataactcttgtatgcaatattcagtcgcgaactgcacatacctt |
34572209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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