View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20070_low_32 (Length: 247)
Name: NF20070_low_32
Description: NF20070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20070_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 26770144 - 26769930
Alignment:
| Q |
17 |
caaaggttgttgagattctcaatagaattcaaaaggtcatgaacaacaatatcatgactcataggtcaataaatattgggtttacgagaattcattttac |
116 |
Q |
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| T |
26770144 |
caaagattgttgatattctcaatagagttcaaaagatcatgcacaacaatatcatgactcttaggtccataaatattgggtttacgatgattcattttac |
26770045 |
T |
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| Q |
117 |
ttcaaaaaattaacttataatcaaaggattcattttattatccaaaaatgtctaacgacataacttat--tgcatatttaccttctattcatgtatgatt |
214 |
Q |
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| T |
26770044 |
tccaaaaaattaacttataatcaaaggattcattttactatccaaaaatgtctaacgacatagcttgttgtgtatatttaccttctatttatgtataatt |
26769945 |
T |
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| Q |
215 |
aatcattgatatata |
229 |
Q |
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| T |
26769944 |
aattattgatatata |
26769930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 114
Target Start/End: Complemental strand, 43856894 - 43856800
Alignment:
| Q |
20 |
aggttgttgagattctcaatagaattcaaaaggtcatgaacaacaatatcatgactcataggtcaataaatattgggtttacgagaattcatttt |
114 |
Q |
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| T |
43856894 |
aggttgttgaccttctacatagagttcaaagggtcatgcacaacaatgtcatgactcctaggtccatgaatgttatgtttacgagaattgatttt |
43856800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 156 - 222
Target Start/End: Original strand, 5329787 - 5329853
Alignment:
| Q |
156 |
atccaaaaatgtctaacgacataacttattgcatatttaccttctattcatgtatgattaatcattg |
222 |
Q |
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| T |
5329787 |
atccaaaaaggcctaacgacacaacttatttcacatttgccttctattcatgtgtaattaatcattg |
5329853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 114
Target Start/End: Original strand, 3262247 - 3262323
Alignment:
| Q |
38 |
atagaattcaaaaggtcatgaacaacaatatcatgactcataggtcaataaatattgggtttacgagaattcatttt |
114 |
Q |
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| T |
3262247 |
atagagttcaaagggtcttgcacatcagtgtcatgactcataggtccataaatattatgtttacgagaattgatttt |
3262323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 17344640 - 17344564
Alignment:
| Q |
38 |
atagaattcaaaaggtcatgaacaacaatatcatgactcataggtcaataaatattgggtttacgagaattcatttt |
114 |
Q |
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| T |
17344640 |
atagagttcaaaaggtcatgcataacaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattgatttt |
17344564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 230
Target Start/End: Original strand, 25376009 - 25376090
Alignment:
| Q |
149 |
ttttattatccaaaaatgtctaacgacataacttattgcatatttaccttctattcatgtatgattaatcattgatatatat |
230 |
Q |
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| T |
25376009 |
ttttactatccaaaaaggcctaacgacgtaacttgttgtttgtttgccttctattcatgtgtaattaatcatttatttatat |
25376090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 229
Target Start/End: Complemental strand, 53098358 - 53098270
Alignment:
| Q |
141 |
aggattcattttattatccaaaaatgtctaacgacataacttattgcatatttaccttctattcatgtatgattaatcattgatatata |
229 |
Q |
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| T |
53098358 |
aggattgattttacaatccaaaaatgcctcgcggcatagcttattgcatgtttgtcttctattcatgtgtaattaattcttgatatata |
53098270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 46940980 - 46941032
Alignment:
| Q |
178 |
aacttattgcatatttaccttctattcatgtatgattaatcattgatatatat |
230 |
Q |
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| T |
46940980 |
aacttgttgcctgtttaccttctattcatgtgtaattaatcattaatatatat |
46941032 |
T |
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