View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20070_low_33 (Length: 239)

Name: NF20070_low_33
Description: NF20070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20070_low_33
NF20070_low_33
[»] chr1 (4 HSPs)
chr1 (1-221)||(29442926-29443146)
chr1 (10-202)||(29423588-29423780)
chr1 (7-177)||(29452956-29453126)
chr1 (14-192)||(29467418-29467595)
[»] chr2 (11 HSPs)
chr2 (37-146)||(12012220-12012329)
chr2 (10-179)||(9283831-9284000)
chr2 (47-96)||(9274872-9274921)
chr2 (19-79)||(8579228-8579288)
chr2 (11-87)||(10353442-10353518)
chr2 (47-177)||(9060778-9060908)
chr2 (37-179)||(11987122-11987264)
chr2 (120-177)||(9292358-9292415)
chr2 (120-177)||(9357613-9357670)
chr2 (47-177)||(10336198-10336331)
chr2 (120-177)||(8573142-8573199)
[»] chr4 (1 HSPs)
chr4 (7-177)||(26575190-26575360)
[»] scaffold0667 (1 HSPs)
scaffold0667 (30-177)||(4823-4970)
[»] chr3 (1 HSPs)
chr3 (47-177)||(37462855-37462985)
[»] chr8 (1 HSPs)
chr8 (47-177)||(41966366-41966496)


Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 29443146 - 29442926
Alignment:
Q  1 ttgttcttcgagcataggaaagagtgtaaggcatagtaggaagttctttccacgagtttgttttgaagctgaagagtctaacatgtgattcaaaagtaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29443146 ttgttcttcgagcataggaaagagtgtaaggcatagtaggaagttctttccacgagtttgttttgaagctgaagagtctaacatgtgattcaaaagtaga 29443047  T
Q  101 gtgttgtaccccaacgaagcaagagattctgatgagtttgtagtcgttggtcaatggatcaaaaccgaagccgtgaatgtaaaagccgacgtaaatgttg 200  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29443046 gtgttgtaccccaacgaagcaagagattctgatgagtttgtaatcgttggtcaatggatcaaaaccgaagccgtgaatgcaaaagccgacgtaaatgttg 29442947  T
Q  201 ttgttagattcatggtgttga 221  Q
    |||||||||||||||||||||    
T  29442946 ttgttagattcatggtgttga 29442926  T

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Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 10 - 202
Target Start/End: Original strand, 29423588 - 29423780
Alignment:
Q  10 gagcataggaaagagtgtaaggcatagtaggaagttctttccacgagtttgttttgaagctgaagagtctaacatgtgattcaaaagtagagtgttgtac 109  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||  ||||||||||| ||||||| |||||||     
T  29423588 gagcatagtaaagagtgtaaggcatggtaggaagttctttccacgagtttgttttcgagctgaagagtctcgcatgtgattcagaagtagattgttgtat 29423687  T
Q  110 cccaacgaagcaagagattctgatgagtttgtagtcgttggtcaatggatcaaaaccgaagccgtgaatgtaaaagccgacgtaaatgttgtt 202  Q
    | | ||||| ||  ||||| ||| ||||||||| || |  || |||||||||||||||||||||| || | ||||| || |||| ||||||||    
T  29423688 ctcgacgaaacagaagattgtgaggagtttgtaatcatcagttaatggatcaaaaccgaagccgtaaacgcaaaagtcggcgtagatgttgtt 29423780  T

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Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 177
Target Start/End: Complemental strand, 29453126 - 29452956
Alignment:
Q  7 ttcgagcataggaaagagtgtaaggcatagtaggaagttctttccacgagtttgttttgaagctgaagagtctaacatgtgattcaaaagtagagtgttg 106  Q
    |||||| ||||||||||| ||| |||||| ||||||| ||||||||||||||  ||||  ||||||||||||| |||||||| ||| ||||||||| |||    
T  29453126 ttcgaggataggaaagagcgtacggcatactaggaaggtctttccacgagttcattttcgagctgaagagtctcacatgtgaatcagaagtagagtattg 29453027  T
Q  107 taccccaacgaagcaagagattctgatgagtttgtagtcgttggtcaatggatcaaaaccgaagccgtgaa 177  Q
    |    ||||||  ||||||||||||| ||||||||| |||  | | || ||||||||||| ||||||||||    
T  29453026 tggatcaacgatacaagagattctgaggagtttgtaatcgacgtttaacggatcaaaaccaaagccgtgaa 29452956  T

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Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 192
Target Start/End: Complemental strand, 29467595 - 29467418
Alignment:
Q  14 ataggaaagagtgtaaggcatagtaggaagttctttccacgagtttgttttgaagctgaagagtctaacatgtgattcaaaagtagagtgttgtacccca 113  Q
    |||| |||||| ||| |||||| ||| |||| ||||||| ||||| |||||  ||||||||||| |||||||||| |||  |||   ||| ||||         
T  29467595 atagtaaagagagtacggcatactagaaagtactttccaggagttcgttttcgagctgaagagtgtaacatgtgaatcatgagtgtggtggtgtagtttg 29467496  T
Q  114 acgaagcaagagattctgatgagtttgtagtcgttggtcaatggatcaaaaccgaagccgtgaatgtaaaagccgacgt 192  Q
    ||||| ||||||||||||| ||||||||| || | ||| ||||||||||||||||||||||||| | ||||||||||||    
T  29467495 acgaaacaagagattctga-gagtttgtaatcatcggttaatggatcaaaaccgaagccgtgaacgcaaaagccgacgt 29467418  T

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Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 146
Target Start/End: Complemental strand, 12012329 - 12012220
Alignment:
Q  37 taggaagttctttccacgagtttgttttgaagctgaagagtctaacatgtgattcaaaagtagagtgttgtaccccaacgaagcaagagattctgatgag 136  Q
    |||||||| |||||||||||||||||||  || |||||||||| |||| ||| ||||||||||||| |||||   ||||||| |||||||||||||| ||    
T  12012329 taggaagtactttccacgagtttgttttcgaggtgaagagtctgacatatgaatcaaaagtagagttttgtaaatcaacgaaccaagagattctgataag 12012230  T
Q  137 tttgtagtcg 146  Q
     |||||||||    
T  12012229 cttgtagtcg 12012220  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 179
Target Start/End: Complemental strand, 9284000 - 9283831
Alignment:
Q  10 gagcataggaaagagtgtaaggcatagtaggaagttctttccacgagtttgttttgaagctgaagagtctaacatgtgattcaaaagtagagtgttgtac 109  Q
    |||||||| ||| |||||| |||||| |||||| |  ||||||||||||||||||| |||||||||||||  ||||||| | | ||  ||||| |||||     
T  9284000 gagcatagtaaacagtgtagggcataataggaattattttccacgagtttgttttggagctgaagagtctggcatgtgaatgataaaaagagttttgtag 9283901  T
Q  110 cccaacgaagcaagagattctgatgagtttgtagtcgttggtcaatggatcaaaaccgaagccgtgaatg 179  Q
        || |  |||||||||| || ||||||||| |||  ||| || ||||||||||||||||||||||||    
T  9283900 agatactagccaagagattcggaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaatg 9283831  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 9274872 - 9274921
Alignment:
Q  47 tttccacgagtttgttttgaagctgaagagtctaacatgtgattcaaaag 96  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  9274872 tttccacgagtttgttttcaagctgaagagtctcacatgtgattcaaaag 9274921  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 8579288 - 8579228
Alignment:
Q  19 aaagagtgtaaggcatagtaggaagttctttccacgagtttgttttgaagctgaagagtct 79  Q
    |||||| ||| || ||| |||||||| |||||||||||||||||||| |||||||||||||    
T  8579288 aaagagcgtacgggatattaggaagtgctttccacgagtttgttttggagctgaagagtct 8579228  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 10353442 - 10353518
Alignment:
Q  11 agcataggaaagagtgtaaggcatagtaggaagttctttccacgagtttgttttgaagctgaagagtctaacatgtg 87  Q
    ||||||| ||||||  ||||||| | |||||| | ||||||| ||||||||||| |||||||||||||| |||||||    
T  10353442 agcatagtaaagagaataaggcaaattaggaattactttccatgagtttgttttcaagctgaagagtctgacatgtg 10353518  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 47 - 177
Target Start/End: Complemental strand, 9060908 - 9060778
Alignment:
Q  47 tttccacgagtttgttttgaagctgaagagtctaacatgtgattcaaaagtagagtgttgtaccccaacgaagcaagagattctgatgagtttgtagtcg 146  Q
    |||||||||||||||||| ||||| ||||| || |||||||| ||| ||  |  || ||||    |||  || |||| |||||||| ||||||||| |||    
T  9060908 tttccacgagtttgttttcaagctaaagagactgacatgtgaatcataaaaaatgttttgtcgagcaaataaccaagtgattctgaggagtttgtaatcg 9060809  T
Q  147 ttggtcaatggatcaaaaccgaagccgtgaa 177  Q
      ||| |||||||||||||||||||||||||    
T  9060808 gcggtgaatggatcaaaaccgaagccgtgaa 9060778  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 179
Target Start/End: Complemental strand, 11987264 - 11987122
Alignment:
Q  37 taggaagttctttccacgagtttgttttgaagctgaagagtctaacatgtgattcaaaagtagagtgttgtaccccaacgaagcaagagattctgatgag 136  Q
    |||||||| ||||||||||||| || ||  || |||||||||| |||| ||| |||||||||  ||  ||||   |||| || |||||||||||||||||    
T  11987264 taggaagtactttccacgagttcgtcttcgaggtgaagagtctgacatatgaatcaaaagtacggttgtgtagatcaacaaaccaagagattctgatgag 11987165  T
Q  137 tttgtagtcgttggtcaatggatcaaaaccgaagccgtgaatg 179  Q
    |||||| |||   |  || |||||||| ||||| |||||||||    
T  11987164 tttgtaatcggatgaaaaaggatcaaagccgaatccgtgaatg 11987122  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 9292358 - 9292415
Alignment:
Q  120 caagagattctgatgagtttgtagtcgttggtcaatggatcaaaaccgaagccgtgaa 177  Q
    ||||||||||||| ||||||||| |||  ||| ||||||||| |||||||||||||||    
T  9292358 caagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaa 9292415  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 9357613 - 9357670
Alignment:
Q  120 caagagattctgatgagtttgtagtcgttggtcaatggatcaaaaccgaagccgtgaa 177  Q
    ||||||||||||| ||||||||| |||  ||| || ||||||||||||||||||||||    
T  9357613 caagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaa 9357670  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 177
Target Start/End: Original strand, 10336198 - 10336331
Alignment:
Q  47 tttccacgagtttgttttgaagctgaagagtctaacatgtgatt---caaaagtagagtgttgtaccccaacgaagcaagagattctgatgagtttgtag 143  Q
    |||||| |||||||||||  ||||||||||| | | |||||| |   ||||||||  ||||||||   | ||||| ||||||||||||| |||||||||     
T  10336198 tttccaagagtttgttttcgagctgaagagtgtcaaatgtgaattatcaaaagtatggtgttgtagatcgacgaaccaagagattctgaggagtttgtaa 10336297  T
Q  144 tcgttggtcaatggatcaaaaccgaagccgtgaa 177  Q
    |||  ||  |||| |||||||||||| |||||||    
T  10336298 tcggcggataatgaatcaaaaccgaatccgtgaa 10336331  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 177
Target Start/End: Complemental strand, 8573199 - 8573142
Alignment:
Q  120 caagagattctgatgagtttgtagtcgttggtcaatggatcaaaaccgaagccgtgaa 177  Q
    |||||||||| || ||||||||| |||  ||| ||| |||||||||||||||||||||    
T  8573199 caagagattcggaggagtttgtaatcggcggttaatagatcaaaaccgaagccgtgaa 8573142  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 177
Target Start/End: Original strand, 26575190 - 26575360
Alignment:
Q  7 ttcgagcataggaaagagtgtaaggcatagtaggaagttctttccacgagtttgttttgaagctgaagagtctaacatgtgattcaaaagtagagtgttg 106  Q
    |||||| |||| |||||| |||||| | | |||||| |  |||||| ||||||||||| ||||||||||||||||||||||  ||| ||  || || |||    
T  26575190 ttcgagtatagtaaagagcgtaaggaaaattaggaattattttccatgagtttgttttcaagctgaagagtctaacatgtggatcataaaaagggttttg 26575289  T
Q  107 taccccaacgaagcaagagattctgatgagtttgtagtcgttggtcaatggatcaaaaccgaagccgtgaa 177  Q
    ||   | |  ||| |||||||||||| ||||||||| |||  ||  || | ||||||||||||||||||||    
T  26575290 tagatcgagcaagtaagagattctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccgtgaa 26575360  T

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Target: scaffold0667 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 177
Target Start/End: Original strand, 4823 - 4970
Alignment:
Q  30 ggcatagtaggaagttctttccacgagtttgttttgaagctgaagagtctaacatgtgattcaaaagtagagtgttgtaccccaacgaagcaagagattc 129  Q
    ||||||||||||| |  |||||||||||| ||||| ||||| ||||||||||||||||  ||| ||  || || |||||     || || ||||||| ||    
T  4823 ggcatagtaggaattattttccacgagttggttttcaagctaaagagtctaacatgtggatcataaaaagggttttgtagagagactaaccaagagagtc 4922  T
Q  130 tgatgagtttgtagtcgttggtcaatggatcaaaaccgaagccgtgaa 177  Q
    ||| || |||||| |||  ||| || ||||||||||||||||||||||    
T  4923 tgaggattttgtaatcgccggttaaaggatcaaaaccgaagccgtgaa 4970  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 177
Target Start/End: Original strand, 37462855 - 37462985
Alignment:
Q  47 tttccacgagtttgttttgaagctgaagagtctaacatgtgattcaaaagtagagtgttgtaccccaacgaag-caagagattctgatgagtttgtagtc 145  Q
    ||||||||||||||||||| ||||||||||||| |||||||  ||| ||  || || |||||   | | |||| ||||||||||||| ||||||||| ||    
T  37462855 tttccacgagtttgttttggagctgaagagtctcacatgtggatcataaaaagggttttgtagatcga-gaagccaagagattctgaggagtttgtaatc 37462953  T
Q  146 gttggtcaatggatcaaaaccgaagccgtgaa 177  Q
    |  ||| || | ||||||||||||||||||||    
T  37462954 gccggttaaagaatcaaaaccgaagccgtgaa 37462985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 47 - 177
Target Start/End: Complemental strand, 41966496 - 41966366
Alignment:
Q  47 tttccacgagtttgttttgaagctgaagagtctaacatgtgattcaaaagtagagtgttgtaccccaacgaagcaagagattctgatgagtttgtagtcg 146  Q
    ||||||||||||  ||||  |||| || || || |||||||| |||||||||||| |||||    |||   | ||||||||||||| ||||||||  |||    
T  41966496 tttccacgagttgtttttagagctaaatagcctgacatgtgaatcaaaagtagagagttgttgatcaaaagaccaagagattctgaggagtttgtgatcg 41966397  T
Q  147 ttggtcaatggatcaaaaccgaagccgtgaa 177  Q
     |||| ||||||||||||||||| |||||||    
T  41966396 ctggttaatggatcaaaaccgaatccgtgaa 41966366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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