View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20070_low_4 (Length: 732)

Name: NF20070_low_4
Description: NF20070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20070_low_4
NF20070_low_4
[»] chr1 (7 HSPs)
chr1 (256-718)||(12146102-12146561)
chr1 (22-234)||(12145891-12146103)
chr1 (404-495)||(12149470-12149561)
chr1 (404-496)||(12163953-12164045)
chr1 (426-495)||(12182296-12182365)
chr1 (426-495)||(12188301-12188370)
chr1 (438-495)||(12175329-12175386)


Alignment Details
Target: chr1 (Bit Score: 432; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 256 - 718
Target Start/End: Original strand, 12146102 - 12146561
Alignment:
Q  256 tatgctagctacttttgatctaacctaaacattcaaagtgcatgatactatatcaaaatatcacgagttacaaataataataattaattgttatatggta 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||    
T  12146102 tatgctagctacttttgatctaacctaaacattcaaagtgcatgatactat--caaactatcacgagttacaaataataataattaattgttatatggta 12146199  T
Q  356 aaacttatttatgaatagacttaattaccatcttggttgtcaagattcttgtccaagtctttgggtgcagtctcagcagaactgagaaggatggaagcca 455  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12146200 aaacttaattatgaatagacttaattaccatcttggttgtcaagattcttgtccaagtctttgggtgcagtctcagcagaactgagaaggatggaagcca 12146299  T
Q  456 acaacatagctagaaaaagtaaagccttggaattcatttttgctaacacaatgtgaaaactttatctattttatacgtatggatggatgaaaaggatgtg 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12146300 acaacatagctagaaaaagtaaagccttggaattcatttttgctaacacaatgtgaaaactttatctattttatacgtatggatggatgaaaaggatgtg 12146399  T
Q  556 actaaatgttgttgtatttatagtcaaggtgagcaagaaatagaacaagctagagcatacaatatttgactttgaattaattcattcttatctttaacaa 655  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  12146400 actaaatgttgttgtatttatagtcaaggtgagcaagaaatagaacaagctagagcatacaatatttgacttcgaattaattcattcttatctttaacaa 12146499  T
Q  656 aatgctgtaatgcaaaaataatgatcattgatattttacacacttatgtcaatctgccctttg 718  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  12146500 aatgctgtaatgcaaaaataatgatcattgata-tttacacacttatgtcaatctgccctttg 12146561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 22 - 234
Target Start/End: Original strand, 12145891 - 12146103
Alignment:
Q  22 agccccaatcacagcaaccgtgatggcaatatcgtccgccgtaatgtcctccgccgtaaccacctccaccataaccacttccaccaccacgccatggacc 121  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12145891 agccccaatcacagcaaccgtgatgacaatatcttccgccgtaatgtcctccaccgtaaccacctccaccataaccacttccaccaccacgccatggacc 12145990  T
Q  122 gcctacatattggctttcatctaccccatttgtttcatagaactctacagatattaaaaaacaaaacatatgattactagagattaaaatataaggttta 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  12145991 gcctacatattggctttcatctaccccatttgtttcatagaactctacaaatattgaaaaacaaaacatatgattactagaaattaaaatataaggttta 12146090  T
Q  222 cacatatatttta 234  Q
    |||||||||||||    
T  12146091 cacatatatttta 12146103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 404 - 495
Target Start/End: Complemental strand, 12149561 - 12149470
Alignment:
Q  404 ttgtccaagtctttgggtgcagtctcagcagaactgagaaggatggaagccaacaacatagctagaaaaagtaaagccttggaattcatttt 495  Q
    |||||||||||||||||||||| ||| ||| || ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  12149561 ttgtccaagtctttgggtgcagactctgcacaaatgagaaggatggaagccaacaacatggctagaaaaagtaacgccttggaattcatttt 12149470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 404 - 496
Target Start/End: Complemental strand, 12164045 - 12163953
Alignment:
Q  404 ttgtccaagtctttgggtgcagtctcagcagaactgagaaggatggaagccaacaacatagctagaaaaagtaaagccttggaattcattttt 496  Q
    |||||||||||||||||||||| ||| ||| |  | |||||||||| |||||||| ||| ||||| |||||||||||||| ||||||||||||    
T  12164045 ttgtccaagtctttgggtgcagactctgcacatataagaaggatggtagccaacagcatggctaggaaaagtaaagcctttgaattcattttt 12163953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 426 - 495
Target Start/End: Complemental strand, 12182365 - 12182296
Alignment:
Q  426 tctcagcagaactgagaaggatggaagccaacaacatagctagaaaaagtaaagccttggaattcatttt 495  Q
    ||||||||||  |||||||||||||||||| ||||||||  |||||||||||  | ||||||||||||||    
T  12182365 tctcagcagagatgagaaggatggaagccagcaacatagtaagaaaaagtaaccctttggaattcatttt 12182296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 426 - 495
Target Start/End: Complemental strand, 12188370 - 12188301
Alignment:
Q  426 tctcagcagaactgagaaggatggaagccaacaacatagctagaaaaagtaaagccttggaattcatttt 495  Q
    ||||||||||  |||||||||||||||||| ||||||||  |||||||||||  | ||||||||||||||    
T  12188370 tctcagcagagatgagaaggatggaagccagcaacatagtaagaaaaagtaaccctttggaattcatttt 12188301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 438 - 495
Target Start/End: Complemental strand, 12175386 - 12175329
Alignment:
Q  438 tgagaaggatggaagccaacaacatagctagaaaaagtaaagccttggaattcatttt 495  Q
    ||||||| ||||||||||| | ||||||||||||||||||  | ||||||||||||||    
T  12175386 tgagaagaatggaagccaagagcatagctagaaaaagtaaccctttggaattcatttt 12175329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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