View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20070_low_5 (Length: 716)

Name: NF20070_low_5
Description: NF20070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20070_low_5
NF20070_low_5
[»] chr2 (3 HSPs)
chr2 (58-669)||(33880400-33880989)
chr2 (424-505)||(33875999-33876080)
chr2 (18-48)||(33881114-33881144)


Alignment Details
Target: chr2 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 58 - 669
Target Start/End: Complemental strand, 33880989 - 33880400
Alignment:
Q  58 aaaattataaatcgtcatttggaaaaaacctccaaccgatacatgcaaagttaatattgatgttttgtttattccttctaatcgtagcactggggatgag 157  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  33880989 aaaattataaatcgtcatttggataaa-cctccaaccgatacatgcaaagttaatattgatgttttgtttattccttctaatcgtagcactggggat--- 33880894  T
Q  158 tttcgtaaatgattcaatacttccattccaaaattacttccatcaacgcgttaacaactgaaacatggtatgt--acattggaagtacaaaggatgaaaa 255  Q
                 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||    
T  33880893 -------------tcaatatttccattccaaaattacttccatcaacgcgttaacaactgaaacatggtatgtgtacattggaagtactaaggatgaaaa 33880807  T
Q  256 tgagtgaatagactttggatacaaaaactgcatatgaaccatgtgctatgaatcaagtggttagttagat--------taatgggtagtacctaagttct 347  Q
    ||||||||||||              ||||| ||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||    
T  33880806 tgagtgaataga--------------actgcctatgaaccatgtgctatgaatcaagtggttagttagatacttggattaatgggtagtacctaagttct 33880721  T
Q  348 tccatatattaacttgactttatttacctctccacttatcttcaaattactcaaactcgataaattnnnnnnntataaaataaacagcacatccttagtc 447  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        || ||||||||||||||||||||||||    
T  33880720 tccatatattaacttgactttatttacctctccacttatcttcaaattactcaaactcgataaataaaaaaaataaaaaataaacagcacatccttagtc 33880621  T
Q  448 tcttctaaaacttataagtgacacaatgttacaaacgcggatttttgtccacaaaatccaacaccctccgtttgtcataacgtaacagtgtaaattttac 547  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33880620 tcttctaaaacttataagtgacacaatgttacaaacgcggatttttgtccacaaaatccaacactctccgtttgtcataacgtaacagtgtaaattttac 33880521  T
Q  548 aagaatccaagttagctattttttattttaaatatttcgacaactaaataatatcacttcacatttaagttcgaatgtatgtaact---atgaacttcaa 644  Q
    ||| |||||||||||||||||||||||||||||||||| |||||    |||||||||||||||||||||||||||||||||| | |   |||||||||||    
T  33880520 aaggatccaagttagctattttttattttaaatatttcaacaac----taatatcacttcacatttaagttcgaatgtatgttaatatgatgaacttcaa 33880425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 424 - 505
Target Start/End: Complemental strand, 33876080 - 33875999
Alignment:
Q  424 aaaataaacagcacatccttagtctcttctaaaacttataagtgacacaatgttacaaacgcggatttttgtccacaaaatc 505  Q
    |||| ||| |||||||||||||  ||||||||||||||  |||||||||| |||  |||||| |||||| ||| ||||||||    
T  33876080 aaaaaaaatagcacatccttagcgtcttctaaaacttactagtgacacaaagttcaaaacgcagattttggtctacaaaatc 33875999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 33881144 - 33881114
Alignment:
Q  18 gtttctacatggattgtggaaggaaagattt 48  Q
    |||||||||||||||||||||||||||||||    
T  33881144 gtttctacatggattgtggaaggaaagattt 33881114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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