View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20070_low_6 (Length: 600)
Name: NF20070_low_6
Description: NF20070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20070_low_6 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 490; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 1 - 585
Target Start/End: Original strand, 17057664 - 17058243
Alignment:
| Q |
1 |
tacaggtatggtgattgccgcaggttcaggaacgactatctttcttggtttatcttgtgcaacgatatttttgcttacaggtaagtgagtgcaattcttt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17057664 |
tacaggtatggtgattgccgcaggttcaggaacgactatctttcttggtttatcttgtgcaacgatatttttgcttacaggtaagtgagtgcaattcttt |
17057763 |
T |
|
| Q |
101 |
ctaaatctgcatagaacataattattgtcctgcaaaaaacaagatnnnnnnnntcaaatcaaatcatgcaccaaataactagggctaagaatcaaacgct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
17057764 |
ctaaatctgcatagaacataattattgtcctgcaaaaaacaagataaaaa-----aaatcaaataatgcaccaaataactagggctaagaatcaaacgct |
17057858 |
T |
|
| Q |
201 |
atagatattgaaacctagggcttaccaaaggattgcttatcaaagaattatggaggctatattcatgcaaaatccatccaccatcttgagaagtgtcact |
300 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17057859 |
atagatattggaacctagggcttaccaaaggattgcttatcaaagaattgtggaggctatattcatgcaaaatccatccaccatcttgagaagtgtcact |
17057958 |
T |
|
| Q |
301 |
cttctcaaaacgaaaacgttttttcatgccgaggatttggttcttgtctttggcgaatatatttttcccagcatcttcaccttcccatcgaccaagtcca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||| |
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|
| T |
17057959 |
cttctcaaaacgaaaacgttttttcatgccaaggatttggttcttgtctttggcgaatatattttttccagaatcttcaccttcccatctaccaagtcca |
17058058 |
T |
|
| Q |
401 |
atagtgcgaactacacgagagctagttgcagatttcttctttaaggttgtaaagaagtataggtctttttcacgatacgagtaggaagttccgaactctt |
500 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||| ||||||||||||||||| |
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|
| T |
17058059 |
atagtgcgaactacgcgcgagctagttgcagatttcttctttaaggttgtaaagaagtataagtcttttccacgatttgagttggaagttccgaactctt |
17058158 |
T |
|
| Q |
501 |
cccaaatctcccatggattctttgcagtgctgaacaaatcgtgttcaagaatggtgatatgattgggcaaaggtttgttatgaat |
585 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17058159 |
cccaaatctcccatggattctttgcagtgccgaacaaatcgtgttcaagaatggtgatatgattgggcaaaggtttgttatgaat |
17058243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 220 - 523
Target Start/End: Complemental strand, 6044738 - 6044442
Alignment:
| Q |
220 |
gcttaccaaaggattgcttatcaaagaattatggaggctatattcatgcaaaatccatccaccatcttgagaagtgtcactcttctcaaaacgaaaacgt |
319 |
Q |
| |
|
||||||| ||| |||| | |||||||| | || ||||||||||||||||| |||||||||||||||| |||||||| |||||||||||| | |||||| |
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|
| T |
6044738 |
gcttaccgaagcattgttaatcaaagatatgtgaaggctatattcatgcaagatccatccaccatctttagaagtgttactcttctcaaagcagaaacgt |
6044639 |
T |
|
| Q |
320 |
tttttcatgccgaggatttggttcttgtctttggcgaatatatttttcccagcatcttcaccttcccatcgaccaagtccaatagtgcgaactacacgag |
419 |
Q |
| |
|
||||||| || ||| |||||||| |||||| | | |||| |||| || | || |||||||| ||||| |||||||||||||| | || |
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|
| T |
6044638 |
tttttcagacctagggtttggttc---tctttgtcaactatactttttccgg----ttacgcttcccatgtaccaattccaatagtgcgaatgaagcgtt |
6044546 |
T |
|
| Q |
420 |
agctagttgcagatttcttctttaaggttgtaaagaagtataggtctttttcacgatacgagtaggaagttccgaactcttcccaaatctcccatggatt |
519 |
Q |
| |
|
||||| | |||| ||||||||||||| || ||||| |||| ||||||| || |||| |||| ||| || | |||||||||||||||||||| ||||| |
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|
| T |
6044545 |
tactagtgggagatgtcttctttaaggtagtgaagaaatataagtcttttccaggatatgagtgagaacttgcaaactcttcccaaatctcccaaggatt |
6044446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 220 - 414
Target Start/End: Original strand, 22598561 - 22598758
Alignment:
| Q |
220 |
gcttaccaaaggattgcttatcaaagaattatggaggctatattcatgcaaaatccatccaccatcttgagaagtgtcactcttctcaaaacgaaaacgt |
319 |
Q |
| |
|
||||||||||| ||| ||||||||||| || | ||||||||||||||||| |||||| ||||||| || ||||| |||| |||||||| ||||||| | |
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|
| T |
22598561 |
gcttaccaaagaatttcttatcaaagatttgtcaaggctatattcatgcaagatccattcaccatcatggtaagtgccactattctcaaatcgaaaacat |
22598660 |
T |
|
| Q |
320 |
tttttcatgccgaggatttggttcttgtctttggcgaatatatttttcccag---catcttcaccttcccatcgaccaagtccaatagtgcgaactac |
414 |
Q |
| |
|
||||||| || | || ||||||||||| ||| || | |||| |||| |||| | ||||||||||||||| ||||| |||||||| |||||||| |
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|
| T |
22598661 |
tttttcacaccaatgagttggttcttgttttttgcaactataatttttccagtgtcttcttcaccttcccatgcaccaattccaatagaacgaactac |
22598758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 452 - 582
Target Start/End: Original strand, 22598778 - 22598908
Alignment:
| Q |
452 |
aagaagtataggtctttttcacgatacgagtaggaagttccgaactcttcccaaatctcccatggattctttgcagtgctgaacaaatcgtgttcaagaa |
551 |
Q |
| |
|
||||| |||||||||||||||| ||| ||| | |||| ||| || ||||||||||| ||||| ||||||||| || | || ||||||| |||||||| |
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|
| T |
22598778 |
aagaaatataggtctttttcacaatatgagcaagaagctccaaattcttcccaaatatcccaaggattctttagggtaccaaataaatcgtattcaagaa |
22598877 |
T |
|
| Q |
552 |
tggtgatatgattgggcaaaggtttgttatg |
582 |
Q |
| |
|
||||||||| |||||| | || ||||||||| |
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|
| T |
22598878 |
tggtgatataattgggaagagatttgttatg |
22598908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 6044938 - 6044892
Alignment:
| Q |
93 |
aattctttctaaatctgcatagaacataattattgtcctgcaaaaaa |
139 |
Q |
| |
|
|||||||||| ||| |||||||||||||||| ||||||||||||||| |
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|
| T |
6044938 |
aattctttctgaatttgcatagaacataattgttgtcctgcaaaaaa |
6044892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 22598442 - 22598487
Alignment:
| Q |
94 |
attctttctaaatctgcatagaacataattattgtcctgcaaaaaa |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||| ||||||| |
|
|
| T |
22598442 |
attctttctaaatctgcatagaacataattgttggcctacaaaaaa |
22598487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 363 - 564
Target Start/End: Original strand, 23432928 - 23433129
Alignment:
| Q |
363 |
ttttcccagcatcttcaccttcccatcgaccaagtccaatagtgcgaactacacgagagctagttgcagatttcttctttaaggttgtaaagaagtatag |
462 |
Q |
| |
|
||||||||||||||||||| ||| ||| || ||||||||||||| |||||| || ||||||| | || |||||||||||||||||| ||||||||| || |
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|
| T |
23432928 |
ttttcccagcatcttcaccctcctatctacgaagtccaatagtgtgaactatgcgtgagctagctacaaatttcttctttaaggttgcaaagaagtaaag |
23433027 |
T |
|
| Q |
463 |
gtctttttcacgatacgagtaggaagttccgaactcttcccaaatctcccatggattctttgcagtgctgaacaaatcgtgttcaagaatggtgatatga |
562 |
Q |
| |
|
|| |||| || |||| || | | ||| ||| ||||||||||||||||||||||||||||||| || |||||||||| || |||||||| |||| |||| |
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|
| T |
23433028 |
gtattttccatgatatgaatggaaagctccaaactcttcccaaatctcccatggattctttgtggtactgaacaaattgtattcaagaaatgtgacatga |
23433127 |
T |
|
| Q |
563 |
tt |
564 |
Q |
| |
|
|| |
|
|
| T |
23433128 |
tt |
23433129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 220 - 523
Target Start/End: Original strand, 48060055 - 48060358
Alignment:
| Q |
220 |
gcttaccaaaggattgcttatcaaagaattatggaggctatattcatgcaaaatccatccaccatcttgagaagtgtcactcttctcaaaacgaaaacgt |
319 |
Q |
| |
|
||||||||||| |||| | |||||||| || | ||| ||||||||||||| |||||| |||| || || |||||| ||||||| |||| ||||||||| |
|
|
| T |
48060055 |
gcttaccaaagtattgttaatcaaagatttgtcaaggttatattcatgcaagatccatgcaccgtcatggaaagtgttactcttcccaaagcgaaaacgt |
48060154 |
T |
|
| Q |
320 |
tttttcatgccgaggatttggttcttgtctttggcgaatatatttttcccagcatcttcaccttcccatcgaccaagtccaatagtgcgaactacacgag |
419 |
Q |
| |
|
||||| || || | || || ||| | |||||||| | ||| ||| || | |||||||||||||| |||| ||||||||| |||| | || |
|
|
| T |
48060155 |
ttttttatacctaagactttgttagtctctttggcaactattccttttccggtgtcttcaccttcccacgtaccacttccaatagtacgaatcaagcgtt |
48060254 |
T |
|
| Q |
420 |
agctagttgcagatttcttctttaaggttgtaaagaagtataggtctttttcacgatacgagtaggaagttccgaactcttcccaaatctcccatggatt |
519 |
Q |
| |
|
||||| |||||||||||||||||||| || ||||| |||||||||||| ||| ||| |||| |||| | | |||||||||||||||||||| ||||| |
|
|
| T |
48060255 |
tactagtggcagatttcttctttaaggtagtgaagaaatataggtcttttccacaatatgagtgagaaggtgcaaactcttcccaaatctcccaaggatt |
48060354 |
T |
|
| Q |
520 |
cttt |
523 |
Q |
| |
|
|||| |
|
|
| T |
48060355 |
cttt |
48060358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 17637411 - 17637460
Alignment:
| Q |
90 |
tgcaattctttctaaatctgcatagaacataattattgtcctgcaaaaaa |
139 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
17637411 |
tgcaattcttttgaaatctgcatagaacataattgttggcctgcaaaaaa |
17637460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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