View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20070_low_7 (Length: 561)
Name: NF20070_low_7
Description: NF20070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20070_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 1 - 546
Target Start/End: Original strand, 30189559 - 30190103
Alignment:
| Q |
1 |
gtctatatcattgttagatataaattatagcaaaaagatgaattcagtttttctttcaaagtagaaatagctggcaaagtagttcaaaattttgatatgg |
100 |
Q |
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| T |
30189559 |
gtctatatcattgctagatataaattatagcaaaaagatgaattcagtttttctttcaaagcagaaatagctggcaaagtagttcaaaattttgatatgg |
30189658 |
T |
|
| Q |
101 |
aatctgtaaaagcatacatacgttgtttgtatgctgattccaatgtgttataagatgatattgaactttcatccgaaaagtttgtcactgaaagtttgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
30189659 |
aatctgtaaaagcatacatacgttgtttgtatgctgattccaatgtgttataagatgatattgaactttcatccgaaaagtt-gtcactgaaagtttcaa |
30189757 |
T |
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| Q |
201 |
aactgatt-gcttttattnnnnnnnncaggattctttggtatgtttacaagatggaaacatttaagttgctataatcagctgaagaatcattcaaggatc |
299 |
Q |
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| T |
30189758 |
aactgatttgcttttattaaaaaaa-caggattctttggtatgtttacaagatggaaacattttagttgctatgatcagctgaagaatcattcaaggatc |
30189856 |
T |
|
| Q |
300 |
caattgattaagtgcattttagtgagactgtagcttgaatttctaccttcataaaactgcagtgtaaacgacacggagacacaagatttacaagctggat |
399 |
Q |
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|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30189857 |
cagttgattaagtgcattttagtgagactgtagcttgagtttctaccttcataaaactgcagtgtaaacgacacggagacacaagatttacaagctggat |
30189956 |
T |
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| Q |
400 |
gcggaaccaaacaagtactaagtgaacttgaattatttattttgagagtggtaaaagtaaatcagaaaaatgggatctttcataggtcatattttgcctg |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30189957 |
gcggaaccaaacaagtactaagtgaacttgaattatttattttgagagtggtaaaagtaaatcagaaaaatgggatctttcataggtcatattttgcctg |
30190056 |
T |
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| Q |
500 |
gaaccttatttcttctagttggcgtatggcatatatggtgctctgtg |
546 |
Q |
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| T |
30190057 |
gaaccttatttcttctagttggcgtatggcatatatggtgctctgtg |
30190103 |
T |
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