View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20070_low_9 (Length: 519)

Name: NF20070_low_9
Description: NF20070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20070_low_9
NF20070_low_9
[»] chr1 (9 HSPs)
chr1 (15-507)||(29443722-29444205)
chr1 (18-372)||(29422520-29422877)
chr1 (18-184)||(29454043-29454209)
chr1 (50-372)||(29468341-29468637)
chr1 (372-506)||(29422909-29423034)
chr1 (367-455)||(29453748-29453836)
chr1 (222-292)||(29453922-29453990)
chr1 (50-123)||(29473678-29473751)
chr1 (367-503)||(29468200-29468316)
[»] chr2 (21 HSPs)
chr2 (15-167)||(12019598-12019750)
chr2 (15-184)||(12006934-12007104)
chr2 (367-454)||(12019338-12019425)
chr2 (392-507)||(12012956-12013063)
chr2 (367-455)||(9066084-9066172)
chr2 (367-507)||(11987894-11988026)
chr2 (367-455)||(9291533-9291617)
chr2 (367-455)||(12006544-12006634)
chr2 (369-454)||(9364210-9364295)
chr2 (65-184)||(11988111-11988229)
chr2 (392-455)||(10352726-10352789)
chr2 (311-376)||(9364086-9364151)
chr2 (367-455)||(10347365-10347453)
chr2 (392-507)||(8573935-8574044)
chr2 (367-455)||(9320566-9320650)
chr2 (396-507)||(9315639-9315742)
chr2 (382-455)||(10335412-10335485)
chr2 (368-455)||(9274161-9274241)
chr2 (392-431)||(9328216-9328255)
chr2 (341-374)||(9274094-9274127)
chr2 (329-374)||(10352630-10352675)
[»] chr3 (1 HSPs)
chr3 (366-507)||(37462064-37462194)
[»] scaffold0667 (1 HSPs)
scaffold0667 (392-455)||(4061-4124)
[»] chr4 (1 HSPs)
chr4 (392-455)||(26574512-26574575)
[»] chr8 (1 HSPs)
chr8 (393-455)||(41967185-41967247)


Alignment Details
Target: chr1 (Bit Score: 432; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 15 - 507
Target Start/End: Complemental strand, 29444205 - 29443722
Alignment:
Q  15 aatatcacaaaagaatagtgatcaaaaaataaatattttgaaaggacttatacatagattttgagtaaattcattgcaggcaaatttctacacaacaatg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29444205 aatatcacaaaagaatagtgatcaaaaaataaatattttgaaaggacttatacatagattttgagtaaattcattgcaggcaaatttctacacaacaatg 29444106  T
Q  115 tttttatccttaaatacatagatacaacgacaaggttgaacagtctcaacatttcgaaataagtttgacatcatagtgaggattctcaactaatgacggn 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  29444105 tttttatccttaaatacatagatacaacgacaaggttgaacagtctcaacatttcgaaataagtttgacatcatagtgaggattctcaactaatgacgga 29444006  T
Q  215 nnnnnntaccaactcatacaaatattatttatttagcctacttttaaagtaaaggaatcctgcaaattccttttgtctaacttaatattttttcctcaag 314  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29444005 aaaaaataccaactcatacaaatattatttatttagcctacttttaaagtaaaggaatcctgcaaattccttttgtctaacttaatattttttcctcaag 29443906  T
Q  315 agaggagggttgagtttagctattcacaaggtcaactcataaaccaacacatagcatacacacattgtcaaatacacatacataaacaaaggtagagact 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||    
T  29443905 agaggagggttgagtttagctattcacaaggtcaactcataaaccaacacatagca---------tgtcaaatacacatacataaacaaaggtagagact 29443815  T
Q  415 tcaaaataattagagaataattgtcctatgataagaattcagaattcaatttgaccttttaacatggagtttaactagatatatcatatgatg 507  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29443814 tcaaaataattagagaatccttgtcctatgataagaattcagaattcaatttgaccttttaacatggagtttaactagatatatcatatgatg 29443722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 18 - 372
Target Start/End: Original strand, 29422520 - 29422877
Alignment:
Q  18 atcacaaaagaatagtgatcaaaaaataaatattttgaaaggacttatacatagattttgagtaaattcattgcaggcaaatttctacacaacaatgttt 117  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||     
T  29422520 atcacaaaagaatagtgataaaaaaataaatattttgaaaggacttgtacatagattttgagtaatttcattgcaggcaaatttctacccaacaatgttc 29422619  T
Q  118 ttatccttaaatacatagatacaacgacaaggttgaacagtctcaacatttcgaaataagtttgaca-----------tcatagtgagga-ttctcaact 205  Q
    ||||||      |||||||||| |||||| ||||||| |||||||||||| ||||||||||||||||           ||||||  |||| ||| |||||    
T  29422620 ttatcc------acatagataccacgacagggttgaatagtctcaacattccgaaataagtttgacaaaataattatttcatagcaaggatttcacaact 29422713  T
Q  206 aatgacggnnnnnnntaccaactcatacaaatattatttatttagcctacttttaaagtaaaggaatcctgcaaattccttttgtctaacttaatatttt 305  Q
    ||||| ||        |||||||||||| ||||||||||| ||| | ||||| ||||| |||||||||||||||| |||||| || |||||| |||||||    
T  29422714 aatgaaggaaaaaaagaccaactcataccaatattatttaattaacatacttctaaagcaaaggaatcctgcaaa-tcctttggtttaacttgatatttt 29422812  T
Q  306 ttcctcaagagaggagggttgagtttagctattcacaaggtcaactcataaaccaacacatagcata 372  Q
    || |||  ||||||||||| ||||||||||| ||||  |||||||||||||||| ||||||||||||    
T  29422813 ttactc--gagaggagggtggagtttagctagtcactgggtcaactcataaacctacacatagcata 29422877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 29454209 - 29454043
Alignment:
Q  18 atcacaaaagaatagtgatcaaaaaataaatattttgaaaggacttatacatagattttgagtaaattcattgcaggcaaatttctacacaacaatgttt 117  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  29454209 atcacaaaagaatagtgataaaaaaataaatattttgaaaggacttgtacatagattttgagtaatttcattgcaggcaaatttctacacaacaatgttc 29454110  T
Q  118 ttatccttaaatacatagatacaacgacaaggttgaacagtctcaacatttcgaaataagtttgaca 184  Q
    |||||||||||||||||||||| || ||| ||| ||| || ||||||||| ||||||||||||||||    
T  29454109 ttatccttaaatacatagataccacaacagggtggaatagactcaacattccgaaataagtttgaca 29454043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 50 - 372
Target Start/End: Complemental strand, 29468637 - 29468341
Alignment:
Q  50 ttttgaaaggacttatacatagattttgagtaaattcattgcaggcaaatttctacacaacaatgtttttatccttaaatacatagatacaacgacaagg 149  Q
    |||||||| || |||||||||||||| || |||  |||||||| ||||||||||||||||||||||| ||||||      |||||||| | | |||| ||    
T  29468637 ttttgaaatgaattatacatagatttggaataatctcattgcatgcaaatttctacacaacaatgttcttatcc------acatagatgccatgacaggg 29468544  T
Q  150 ttgaacagtctcaacatttcgaaataagtttgacatcatagtgaggattctcaactaatgacggnnnnnnntaccaactcatacaaatattatttattta 249  Q
    | |||||         |||| |||||||||||||||| |||||||||| |||||| ||||| ||        |||||||||||| |||||||| || | |    
T  29468543 tcgaaca---------tttcaaaataagtttgacatcgtagtgaggat-ctcaaccaatgaaggaaaaaaagaccaactcataccaatattatatactca 29468454  T
Q  250 gcctacttttaaagtaaaggaatcctgcaaattccttttgtctaacttaatattttttcctcaagagaggagggttgagtttagctattcacaaggtcaa 349  Q
     ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||         ||||||||||||||| | ||||||||||||    
T  29468453 acctacatttaaagtaaaggaatcctgcaaa-tccttttgtctaacttaatattttttcct---------agggttgagtttagccagtcacaaggtcaa 29468364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 372 - 506
Target Start/End: Original strand, 29422909 - 29423034
Alignment:
Q  372 acacacattgtcaaatacacatacataaacaaaggtagagacttcaaaataattagagaataattgtcctatgataagaattcagaattcaatttgacct 471  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||       |||||||||||||||||    
T  29422909 acacacaatgtcaaatacatatacataaacaaaggtagagacttcaaaataattagagaatcattgtcatataata-------agaattcaatttgacct 29423001  T
Q  472 tttaacatggagtttaactagatatatcatatgat 506  Q
    |||||||  ||||||||||||||||||||||||||    
T  29423002 tttaaca--gagtttaactagatatatcatatgat 29423034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 367 - 455
Target Start/End: Complemental strand, 29453836 - 29453748
Alignment:
Q  367 agcatacacacattgtcaaatacacatacataaacaaaggtagagacttcaaaataattagagaataattgtcctatgataagaattca 455  Q
    |||||||||||||||||  ||| | ||||||||||  |||||||||||||||| ||||||||||||  |||| |||| |||||||||||    
T  29453836 agcatacacacattgtcggatagatatacataaacttaggtagagacttcaaagtaattagagaatccttgttctataataagaattca 29453748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 222 - 292
Target Start/End: Complemental strand, 29453990 - 29453922
Alignment:
Q  222 accaactcatacaaatattatttatttagcctacttttaaagtaaaggaatcctgcaaattccttttgtct 292  Q
    |||||||||||| ||||||||||||||| |||||||||||| |||| |||||||||||| |||||||||||    
T  29453990 accaactcataccaatattatttatttaacctacttttaaattaaa-gaatcctgcaaa-tccttttgtct 29453922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 29473751 - 29473678
Alignment:
Q  50 ttttgaaaggacttatacatagattttgagtaaattcattgcaggcaaatttctacacaacaatgtttttatcc 123  Q
    |||||||| || |||||||||||||| || |||  |||||||| ||||||||||||||||||||||| ||||||    
T  29473751 ttttgaaatgaattatacatagatttggaataatctcattgcatgcaaatttctacacaacaatgttcttatcc 29473678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 367 - 503
Target Start/End: Complemental strand, 29468316 - 29468200
Alignment:
Q  367 agcatacacacattgtcaaatacacatacataaacaaaggtagagacttcaaaataattagagaataattgtcctatgataagaattcagaattcaattt 466  Q
    |||||||||||||||||||||||| ||||||||||||||            ||||||||||||||| |||||||||| |||       ||||||||||||    
T  29468316 agcatacacacattgtcaaatacatatacataaacaaag-----------taaataattagagaatcattgtcctataata-------agaattcaattt 29468235  T
Q  467 gaccttttaacatggagtttaactagatatatcatat 503  Q
    ||||||||||||  ||||||||||  |||||||||||    
T  29468234 gaccttttaaca--gagtttaactgcatatatcatat 29468200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 15 - 167
Target Start/End: Complemental strand, 12019750 - 12019598
Alignment:
Q  15 aatatcacaaaagaatagtgatcaaaaa-ataaatattttgaaaggacttatacatagattttgagtaaattcattgcaggcaaatttctacacaacaat 113  Q
    ||||||||||| |||||||||| || || |||||||||||||||||| |||||||||||||| |||||| ||||||||||| ||||||||||||||||||    
T  12019750 aatatcacaaatgaatagtgataaataatataaatattttgaaaggaattatacatagatttggagtaa-ttcattgcaggtaaatttctacacaacaat 12019652  T
Q  114 gtttttatccttaaatacatagatacaacgacaaggttgaacagtctcaacatt 167  Q
     || ||||||||||||||| |||||| || ||| ||| ||| ||||||||||||    
T  12019651 attcttatccttaaatacacagataccacaacagggtggaatagtctcaacatt 12019598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 15 - 184
Target Start/End: Complemental strand, 12007104 - 12006934
Alignment:
Q  15 aatatcacaaaagaatagtgatcaaaaa-ataaatattttgaaaggacttatacatagattttgagtaaattcattgcaggcaaatttctacacaacaat 113  Q
    ||||||||| | |||||||||| || || |||||||||||||||||| ||||||||||| || |||||| ||||||  ||| ||||||||||| ||||||    
T  12007104 aatatcacagatgaatagtgataaataatataaatattttgaaaggaattatacatagagttggagtaatttcattaaaggtaaatttctacagaacaat 12007005  T
Q  114 gtttttatccttaaatacatagatacaacgacaaggttgaacagtctcaacatttcgaaataagtttgaca 184  Q
     || ||||||||||||||| |||||| || ||| ||| ||| | ||||||||||| |||||||||||||||    
T  12007004 attcttatccttaaatacacagataccacaacagggtggaataatctcaacattttgaaataagtttgaca 12006934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 367 - 454
Target Start/End: Complemental strand, 12019425 - 12019338
Alignment:
Q  367 agcatacacacattgtcaaatacacatacataaacaaaggtagagacttcaaaataattagagaataattgtcctatgataagaattc 454  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||  ||||||||| ||||||||||    
T  12019425 agcatacacacattgtcaaatacatatacataaacaaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattc 12019338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 392 - 507
Target Start/End: Complemental strand, 12013063 - 12012956
Alignment:
Q  392 atacataaacaaaggtagagacttcaaaataattagagaataattgtcctatgataagaattcagaattcaatttgaccttttaacatggagtttaacta 491  Q
    |||||||||||||||||||||||||||| ||||||||||||  ||||||||| |||||||       |||||||||||| ||||||||||||| ||||||    
T  12013063 atacataaacaaaggtagagacttcaaagtaattagagaatccttgtcctataataagaa-------ttcaatttgacc-tttaacatggagtctaacta 12012972  T
Q  492 gatatatcatatgatg 507  Q
     |||||||||||||||    
T  12012971 catatatcatatgatg 12012956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 367 - 455
Target Start/End: Complemental strand, 9066172 - 9066084
Alignment:
Q  367 agcatacacacattgtcaaatacacatacataaacaaaggtagagacttcaaaataattagagaataattgtcctatgataagaattca 455  Q
    ||||||||||||||||||||||||  |||||||||||||||||| |||||||| ||||||||||||  || ||||||||||||| ||||    
T  9066172 agcatacacacattgtcaaatacatgtacataaacaaaggtagaaacttcaaagtaattagagaatctttatcctatgataagacttca 9066084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 367 - 507
Target Start/End: Complemental strand, 11988026 - 11987894
Alignment:
Q  367 agcatacacacattgtcaaatacacatacataaacaaaggtagagacttcaaaataattagagaataattgtcctatgataagaattcagaattcaattt 466  Q
    |||||||| ||||||||||||| | |||||||||||||||||||||||||||| |||||||| |||  ||||||||| |||        |||||||||||    
T  11988026 agcatacagacattgtcaaatatatatacataaacaaaggtagagacttcaaagtaattagaaaatccttgtcctataata-------ggaattcaattt 11987934  T
Q  467 gaccttttaacatggagtttaactagatatatcatatgatg 507  Q
    |||| ||||||||  |||||||||| |||||||| ||||||    
T  11987933 gacc-tttaacataaagtttaactacatatatcacatgatg 11987894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 367 - 455
Target Start/End: Original strand, 9291533 - 9291617
Alignment:
Q  367 agcatacacacattgtcaaatacacatacataaacaaaggtagagacttcaaaataattagagaataattgtcctatgataagaattca 455  Q
    |||||||||||||||||| |||    ||||||||||||||||||||||||||| ||||||||||||  ||||||||| |||||||||||    
T  9291533 agcatacacacattgtcacata----tacataaacaaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattca 9291617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 367 - 455
Target Start/End: Complemental strand, 12006634 - 12006544
Alignment:
Q  367 agcatacacacattgtcaaatac--acatacataaacaaaggtagagacttcaaaataattagagaataattgtcctatgataagaattca 455  Q
    ||||||||||||  |||||||||  | |||||||||||||||||||||||||||| ||||||||||||  ||||||||  |||||||||||    
T  12006634 agcatacacacagagtcaaatacttatatacataaacaaaggtagagacttcaaagtaattagagaatccttgtcctaaaataagaattca 12006544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 369 - 454
Target Start/End: Original strand, 9364210 - 9364295
Alignment:
Q  369 catacacacattgtcaaatacacatacataaacaaaggtagagacttcaaaataattagagaataattgtcctatgataagaattc 454  Q
    |||||||||||  ||| ||||| ||||||||||||||||| |||||||||| |||||||||| |  ||||||||| ||||||||||    
T  9364210 catacacacatgctcagatacatatacataaacaaaggtatagacttcaaagtaattagagactccttgtcctataataagaattc 9364295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 184
Target Start/End: Complemental strand, 11988229 - 11988111
Alignment:
Q  65 tacatagattttgagtaaattcattgcaggcaaatttcta-cacaacaatgtttttatccttaaatacatagatacaacgacaaggttgaacagtctcaa 163  Q
    ||||| ||||| |||| | ||||||||| | ||||||||| |||||||| ||| |||||||||  |||| |||||| || ||| ||| ||| |||| |||    
T  11988229 tacattgatttggagttatttcattgcaagaaaatttctaacacaacaacgttcttatcctta--tacacagataccacaacagggtagaatagtcacaa 11988132  T
Q  164 catttcgaaataagtttgaca 184  Q
    |||||||||||||||||||||    
T  11988131 catttcgaaataagtttgaca 11988111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 392 - 455
Target Start/End: Original strand, 10352726 - 10352789
Alignment:
Q  392 atacataaacaaaggtagagacttcaaaataattagagaataattgtcctatgataagaattca 455  Q
    ||||||||||||||||| |||| ||||| ||||||||||||  || ||||||||||||||||||    
T  10352726 atacataaacaaaggtaaagacgtcaaagtaattagagaatccttatcctatgataagaattca 10352789  T

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Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 311 - 376
Target Start/End: Original strand, 9364086 - 9364151
Alignment:
Q  311 caagagaggagggttgagtttagctattcacaaggtcaactcataaaccaacacatagcatacaca 376  Q
    |||||||||||||| || || ||||| ||||||||||||||| |||||| ||||||| ||||||||    
T  9364086 caagagaggagggtggacttcagctagtcacaaggtcaactcttaaaccgacacataacatacaca 9364151  T

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Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 367 - 455
Target Start/End: Original strand, 10347365 - 10347453
Alignment:
Q  367 agcatacacacattgtcaaatacacatacataaacaaaggtagagacttcaaaataattagagaataat-tgtcctatgataagaattca 455  Q
    |||||| | ||||||||||||||| | |||||||| |||||| |||||||||| |||||||| |||| | | ||||||||||||||||||    
T  10347365 agcatatagacattgtcaaatacataaacataaac-aaggtaaagacttcaaagtaattagaaaatactctatcctatgataagaattca 10347453  T

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Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 507
Target Start/End: Complemental strand, 8574044 - 8573935
Alignment:
Q  392 atacataaacaaaggtagagacttcaaaataattagagaataattgtcctatgataagaattcagaattcaatttgaccttttaacatggagtttaacta 491  Q
    ||||||||||||||||| | |||||||| ||||||||||||  ||||||||||  |     | |||||| ||||||||| |||| ||| ||||||||| |    
T  8574044 atacataaacaaaggtataaacttcaaagtaattagagaatccttgtcctatgtga-----taagaatttaatttgacc-tttagcatagagtttaacca 8573951  T
Q  492 gatatatcatatgatg 507  Q
     |||||||||||||||    
T  8573950 catatatcatatgatg 8573935  T

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Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 367 - 455
Target Start/End: Original strand, 9320566 - 9320650
Alignment:
Q  367 agcatacacacattgtcaaatacacatacataaacaaaggtagagacttcaaaataattagagaataattgtcctatgataagaattca 455  Q
    |||||||||||||||||| |||    ||| ||||||||||||||||||||||| ||||||||| ||  |||||| || |||| ||||||    
T  9320566 agcatacacacattgtcacata----tacgtaaacaaaggtagagacttcaaagtaattagagtatccttgtccgataataaaaattca 9320650  T

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Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 396 - 507
Target Start/End: Original strand, 9315639 - 9315742
Alignment:
Q  396 ataaacaaaggtagagacttcaaaataattagagaataattgtcctatgataagaattcagaattcaatttgaccttttaacatggagtttaactagata 495  Q
    ||||||||||||||||| || ||| ||||||| ||||  ||||||||| |||       |||||||||||||||| |||| ||| |||||||||||  ||    
T  9315639 ataaacaaaggtagagaatttaaagtaattagggaatccttgtcctataata-------agaattcaatttgacc-tttagcatagagtttaactactta 9315730  T
Q  496 tatcatatgatg 507  Q
    ||||||||||||    
T  9315731 tatcatatgatg 9315742  T

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Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 382 - 455
Target Start/End: Original strand, 10335412 - 10335485
Alignment:
Q  382 tcaaatacacatacataaacaaaggtagagacttcaaaataattagagaataattgtcctatgataagaattca 455  Q
    ||||||||| |||||||||||||||||  |||| || | ||||||||||||  |  ||||||||||||||||||    
T  10335412 tcaaatacatatacataaacaaaggtaacgactccagagtaattagagaatcctcatcctatgataagaattca 10335485  T

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Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 455
Target Start/End: Original strand, 9274161 - 9274241
Alignment:
Q  368 gcatacacacattgtcaaatacacatacataaacaaaggtagagacttcaaaataattagagaataattgtcctatgataagaattca 455  Q
    ||||||||||||||||| |||    ||||||||||||||||||   |||||| ||||||| ||||  ||||||||| |||||||||||    
T  9274161 gcatacacacattgtcacata----tacataaacaaaggtaga---ttcaaagtaattagtgaatccttgtcctataataagaattca 9274241  T

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Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 431
Target Start/End: Original strand, 9328216 - 9328255
Alignment:
Q  392 atacataaacaaaggtagagacttcaaaataattagagaa 431  Q
    |||| ||||||||||||||||||||||| |||||||||||    
T  9328216 atacgtaaacaaaggtagagacttcaaagtaattagagaa 9328255  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 374
Target Start/End: Original strand, 9274094 - 9274127
Alignment:
Q  341 caaggtcaactcataaaccaacacatagcataca 374  Q
    |||||||||||| |||||||||||||||||||||    
T  9274094 caaggtcaactcttaaaccaacacatagcataca 9274127  T

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Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 374
Target Start/End: Original strand, 10352630 - 10352675
Alignment:
Q  329 tttagctattcacaaggtcaactcataaaccaacacatagcataca 374  Q
    |||||| | ||||||||||||||| |||| ||||||||||||||||    
T  10352630 tttagcaactcacaaggtcaactcctaaaacaacacatagcataca 10352675  T

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Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 366 - 507
Target Start/End: Original strand, 37462064 - 37462194
Alignment:
Q  366 tagcatacacacattgtcaaatacacatacataaacaaaggtagagacttcaaaataattagagaataattgtcctatgataagaattcagaattcaatt 465  Q
    ||||||||||||||||||| |||    ||||||||||||||||||||||||||| ||||||||||||  ||||||||| | |       |||||||||||    
T  37462064 tagcatacacacattgtcacata----tacataaacaaaggtagagacttcaaagtaattagagaatccttgtcctataaca-------agaattcaatt 37462152  T
Q  466 tgaccttttaacatggagtttaactagatatatcatatgatg 507  Q
    |||||||||| ||| ||  ||||||| |||||||||||||||    
T  37462153 tgaccttttagcatagaacttaactacatatatcatatgatg 37462194  T

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Target: scaffold0667 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 455
Target Start/End: Original strand, 4061 - 4124
Alignment:
Q  392 atacataaacaaaggtagagacttcaaaataattagagaataattgtcctatgataagaattca 455  Q
    ||||||||||||||||||||| |||||| |||||| |||||  || |||||| |||||||||||    
T  4061 atacataaacaaaggtagagaattcaaagtaattatagaatccttttcctataataagaattca 4124  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 455
Target Start/End: Original strand, 26574512 - 26574575
Alignment:
Q  392 atacataaacaaaggtagagacttcaaaataattagagaataattgtcctatgataagaattca 455  Q
    |||||||||||| |||| |||| ||||| ||||||||||||  || ||||||||||||||||||    
T  26574512 atacataaacaacggtaaagacgtcaaagtaattagagaatccttatcctatgataagaattca 26574575  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 393 - 455
Target Start/End: Complemental strand, 41967247 - 41967185
Alignment:
Q  393 tacataaacaaaggtagagacttcaaaataattagagaataattgtcctatgataagaattca 455  Q
    |||||||||||||||| || |||| || ||||||||||||| || |||||| |||||||||||    
T  41967247 tacataaacaaaggtaaagccttcgaagtaattagagaatagttatcctataataagaattca 41967185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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