View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20071_high_17 (Length: 458)
Name: NF20071_high_17
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20071_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 4e-88; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 250 - 443
Target Start/End: Original strand, 26187101 - 26187294
Alignment:
| Q |
250 |
tttaacaattgtcatagcatgatccaataattaaatatattttcaattcatataaacttatcaaattatatttttcttacccatnnnnnnntcagacttt |
349 |
Q |
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| T |
26187101 |
tttaacaattgtcatagcatgatccaataattaaatatattttcaattcatataaacttatcaaattatatttttcttacccataaaaaaatcagacttt |
26187200 |
T |
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| Q |
350 |
tagcatctacgaaattatcttgcaagcagtttagtcttaaaatgagtcacacaatttatcacatctgagctagaatagctctagagattatatt |
443 |
Q |
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| T |
26187201 |
tagtatctacgaaattatcttgcaagcagtttagtcttaaaatgagtcacacaatttatcacatctgagctggaatagctctagagattatatt |
26187294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 32 - 168
Target Start/End: Original strand, 26186874 - 26187011
Alignment:
| Q |
32 |
aaagcaaagggtacttatatatatatgaacaaaagagtatataaa-ttttgcatccaaatgaactcttttccaacttctnnnnnnngaatttctaaagtt |
130 |
Q |
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| T |
26186874 |
aaagcaaagggtacttatatatatatgaacaaaagagtatataaaattttgcatccaaatgaactcttttccaacttctaaaaaaagaatttctaaaggt |
26186973 |
T |
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| Q |
131 |
ttatttttgaggaaacaatttccaaagttgaaaaagtg |
168 |
Q |
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| T |
26186974 |
ttatttttgaggaaacaatttccaaagttgaaaaagtg |
26187011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 66 - 168
Target Start/End: Original strand, 26170378 - 26170480
Alignment:
| Q |
66 |
gagtatataaattttgcatccaaatgaactcttttccaacttctnnnnnnngaatttctaaagttttatttttgaggaaacaatttccaaagttgaaaaa |
165 |
Q |
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| T |
26170378 |
gagtatatatattttgcatccaaaataactcttttccaacttctaaattaagaatttctaaagttttattttagaggaaacaattttcaaagttgaaaaa |
26170477 |
T |
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| Q |
166 |
gtg |
168 |
Q |
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| T |
26170478 |
gtg |
26170480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 313
Target Start/End: Original strand, 26170587 - 26170622
Alignment:
| Q |
278 |
aattaaatatattttcaattcatataaacttatcaa |
313 |
Q |
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| T |
26170587 |
aattaaatatattttcaattcatataaacttatcaa |
26170622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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