View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20071_high_22 (Length: 432)
Name: NF20071_high_22
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20071_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 23 - 428
Target Start/End: Original strand, 35506861 - 35507273
Alignment:
| Q |
23 |
gacagtaccaagaaagataatagaatagtannnnnnnnnggtaaatgtacaattggccacgcggtgttggctttattttgacgcaaaaagggaaagacaa |
122 |
Q |
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| T |
35506861 |
gacagtaccaagaaagataatagaatagtatttttttt-ggtaaatgtacaattggccacgcggtgttagctttattttgacgcaaaaagggaaagacaa |
35506959 |
T |
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| Q |
123 |
tcagaagaaacgaacaaaagcaacagtgtatttttcttagaataattgcatgcgtaaccttttatgaatgataatatagtatttgtttatttgtttct-- |
220 |
Q |
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| T |
35506960 |
tcagaagaaacgaacaaaagcaacagtgtatttttcttagaataattgcatgcgtaaccttttatgaatgataatatagtatttgtttatttgttttttt |
35507059 |
T |
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| Q |
221 |
------aacccatcacacaattgacaacttttttagagcttgctcatcaatggacgaggacagttcaattgttccctagcatctaaatatgggagcacca |
314 |
Q |
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| T |
35507060 |
gttaataacccatcacacaatcgacaacttttttagagcttgctcatcaatggacgaggacagttcaattgttccctagcatctaaatatgggagcacca |
35507159 |
T |
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| Q |
315 |
acctaccccaatgcaatttgaaaggtggtgaagaatgtgcaccccagattcttcacgtggagccaaaaaagacctatagaataaggattgctagtacaac |
414 |
Q |
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| T |
35507160 |
acctaccccaatgcaatttgaaaggtggtgaagaatgtgcaccccagattcttcacgtggagccaaaaaagacctatagaataaggattgctagtacaac |
35507259 |
T |
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| Q |
415 |
gtcctttgcttctc |
428 |
Q |
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| T |
35507260 |
gtccttggcttctc |
35507273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 244 - 428
Target Start/End: Original strand, 35525888 - 35526072
Alignment:
| Q |
244 |
tttttagagcttgctcatcaatggacgaggacagttcaattgttccctagcatctaaatatgggagcaccaacctaccccaatgcaatttgaaaggtggt |
343 |
Q |
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||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||| | | || ||| | ||| || ||||||||||| ||||||||| |
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| T |
35525888 |
tttttagagcttgcttatcaatggaagaggacagttcaattgttccctagcagctaatttcgtgaacactaccctgcctcaatgcaatttcaaaggtggt |
35525987 |
T |
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| Q |
344 |
gaagaatgtgcaccccagattcttcacgtggagccaaaaaagacctatagaataaggattgctagtacaacgtcctttgcttctc |
428 |
Q |
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| T |
35525988 |
gaagaatgcgcacccaagattctccaagtagcgccaaaaaagacctatagaataaggattgctagtacaacgtccttagcttctc |
35526072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 255 - 428
Target Start/End: Original strand, 35538544 - 35538717
Alignment:
| Q |
255 |
tgctcatcaatggacgaggacagttcaattgttccctagcatctaaatatgggagcaccaacctaccccaatgcaatttgaaaggtggtgaagaatgtgc |
354 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| |||||| || || ||||| |||||||||||| ||||| ||||| | |||||||||||| |
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| T |
35538544 |
tgctcatcaatggacgaggacaattcaattgttccctagcagctaaatttgtgaacaccaccctaccccaatgtaattttaaaggagatgaagaatgtgc |
35538643 |
T |
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| Q |
355 |
accccagattcttcacgtggagccaaaaaagacctatagaataaggattgctagtacaacgtcctttgcttctc |
428 |
Q |
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||| |||||||||| ||| |||||||||||||||| |||||||||||||| |||||||| || || ||||||| |
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| T |
35538644 |
accagagattcttcaagtgaagccaaaaaagacctacagaataaggattgcgagtacaacatcattagcttctc |
35538717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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