View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20071_high_27 (Length: 405)

Name: NF20071_high_27
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20071_high_27
NF20071_high_27
[»] chr1 (1 HSPs)
chr1 (109-390)||(46586993-46587283)


Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 109 - 390
Target Start/End: Complemental strand, 46587283 - 46586993
Alignment:
Q  109 tggattaaggcttgaagttccgcaccattaattaaatatgctttatagtttatacaattgacatctagtatttagtaa-----------gggatcaaaca 197  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||           |||||||||||    
T  46587283 tggagtaaggcttgaagttccgcaccattaattaaatatgctttatagtttatacaattgacatcta---tttagtaaacgatagtgtagggatcaaaca 46587187  T
Q  198 atttttatccaaatttattagactaggannnnnnnn-aataacacaccggttaatgttggaattattagataataagattgaagttatgttatgagtcct 296  Q
    ||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  46587186 atttttatccaaatttattagactaggatttttttttaataacacaccggttaatgttggaattattagataataagattgaagttatgtcatgagtcct 46587087  T
Q  297 ttaagttttaagttagtagagcccattctcttgtaacattttgacacatcataccatttgatattattggaaccctaaccatgcatctcctttg 390  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46587086 ttaaattttaagttagtagagcccattctcttgtaacattttgacacatcataccatttgatattattggaaccctaaccatgcatctcctttg 46586993  T

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