View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20071_high_28 (Length: 397)
Name: NF20071_high_28
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20071_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 19 - 391
Target Start/End: Complemental strand, 40181037 - 40180665
Alignment:
| Q |
19 |
ctgctagcttggtatttccatttccaagctatgaattaattatactgacatggtctagactctacattgacttgaatagagaggttttaattagataagt |
118 |
Q |
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| T |
40181037 |
ctgctagcttggtatttccatttccaagctatgaattaattatactgacatggtctagactctacattgacttgaatagagaggttttaattagataagt |
40180938 |
T |
|
| Q |
119 |
taaattacaagttttcataaacatttccattttctgatgaaaagtacacattagtccactaataataaatttataattacttaatcaaacatttgttaat |
218 |
Q |
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| T |
40180937 |
taaattacaagttttcataaacatttccattttctgatgaaaagtacacattagtccactaataataaatttataattacttaatcaaacatttgttaat |
40180838 |
T |
|
| Q |
219 |
taattgcagctaaggatttgttaaatttcaaaggattacttgaagctggtccacaacaacttggatgcaatattgtgaaacatccatgtcaaatgcaatg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40180837 |
taattgcagctaaggatttgttaaatttcaaaggattacttgaagctggtccacaacaacttggatgcgatattgtgaaacatccatgtcaaatgcaatg |
40180738 |
T |
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| Q |
319 |
gccttgtcttgactgttctaaacaaaatgaaccaggtgcttttttctctaattctctgtaagcttcttctctc |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40180737 |
gccttgtcttgactgttctaaacaaaatgaaccaggtgcttttttcactaattctctgtaagcttcttctctc |
40180665 |
T |
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