View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20071_high_31 (Length: 379)
Name: NF20071_high_31
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20071_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 17 - 364
Target Start/End: Complemental strand, 26598025 - 26597678
Alignment:
| Q |
17 |
cagttgtcgatctaggagtttcgtcctcctatatatgccaacttatgtctcaagtccatctatacagtttgtagacccttaagcctcacgcgcattgaca |
116 |
Q |
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| T |
26598025 |
cagttgtcgatctaggagtttcgtcctcctatatatgccaacttatgtctcaggtccatctatatagtttgtagacccttaagcctcacacgcattgaca |
26597926 |
T |
|
| Q |
117 |
ttgtctatcttgtgcgttaagagtgtttgcaagtacacattatttttatggaacaaccgccatatttaactacttaattgttcctcaggtccttgatgta |
216 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
26597925 |
ttgtctgtcttgtgcattaagagtgtttgcaagtacacattatttttatggaacaactgccatatttaactacttaattgttcctcaggtccttgatcta |
26597826 |
T |
|
| Q |
217 |
ggtcaggtttctattcaatcataagattatttaaaacttgaaatcatgaatcactaataaacttgaataagacacatgtaattacattgatgtaatttta |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
26597825 |
ggtcaggtttctattcaatcataagattatttaaaacttgaaatcatgaatcactaataaacttgaataagacacatgtaattacattgatataatttta |
26597726 |
T |
|
| Q |
317 |
taaaccaaatatgggtggttaatcttcttctacccttcgaattctctg |
364 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
26597725 |
taaaccaaatatgggtagttaatcttcttctacccttcgaatcctctg |
26597678 |
T |
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