View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20071_high_47 (Length: 303)
Name: NF20071_high_47
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20071_high_47 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 20 - 289
Target Start/End: Complemental strand, 41151645 - 41151377
Alignment:
| Q |
20 |
aaggattactcttggtgaacaatcgaagatgatttcttgatcacttgtgcaactctcatgatagaaaatgaatccataaaaattaggatttgttcatgtt |
119 |
Q |
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| T |
41151645 |
aaggattactcttggtgaacaatcaaagatgatttcttggtcacttgtgcaactctcatgatagaaaatgaatccataaaaattagggtttgttcatgtt |
41151546 |
T |
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| Q |
120 |
aaacatcggaagttaatttttataactcttttgtatttctttgatagtgagaatatgagaactaccgtctccgttgaacttaaatcaatttcaattaaac |
219 |
Q |
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||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||| |||| ||||||| |||||||||||||||| |
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| T |
41151545 |
aaacatcggaagttaatttttgtaactcttttgtgtttctttgatagtgagaatatgagaactactgtct-cgttaaacttaagtcaatttcaattaaac |
41151447 |
T |
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| Q |
220 |
tgagtaaacaatcttggtgtttgtatactccctttatctattgtctctgatatgattgtgctgaagaatt |
289 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41151446 |
tgagtaaacaatgttggtgtttgtatactccctttatctattgtctctgatatgattgtgctgaagaatt |
41151377 |
T |
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