View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20071_high_48 (Length: 297)
Name: NF20071_high_48
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20071_high_48 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 281
Target Start/End: Original strand, 42997793 - 42998056
Alignment:
| Q |
18 |
aacttgtgctcattaaatcaatgccacattctaatacgttcactgaacacaacccatcttagaattagtaggcagcatgtgtcacatgctaatgttgaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42997793 |
aacttgtgctcattaaatcaatgccacattctaacacgttcactgaacacaacccatcttagaattagtaggcagcatgtgtcacatgctaatgttgaga |
42997892 |
T |
|
| Q |
118 |
tacagatcctaatgtattgtatccgtggaagaatggaagctcatcttggacaccctttatattttttcacgttggcacttcaaagcaatctgacaaatac |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42997893 |
tacagatcctaatgtattgtatccgtggaagaatggaagctcatcatggacaccctttatattttttcacgttggcacttcaaagcaatctcacaaatac |
42997992 |
T |
|
| Q |
218 |
atccaatttttgaagtactagtaattgcataaagaattcattctcttttttataaggttggaga |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42997993 |
atccaatttttgaagtactagtaattgcataaagaattcattctcttttttataaggttggaga |
42998056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University