View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20071_high_49 (Length: 292)
Name: NF20071_high_49
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20071_high_49 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 6994719 - 6994462
Alignment:
| Q |
18 |
gtttatacgcacattaattaatcaaagaagatattatcaactcaacagacgaaattttgtacggtcaaattcacacaagtattttccaacataaaaacta |
117 |
Q |
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| T |
6994719 |
gtttatacgcacattaattaatcaaagaagatattatcaactcaacagacgaaattttgtacggtcaaattcacacaagtattttccaacataaaaacta |
6994620 |
T |
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| Q |
118 |
aatagcattttggaccaaactaatggtggcattatgtaactttcctatgtatgaatatatgaaatcatgaatgctttttaataacaataacatcttaaaa |
217 |
Q |
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| T |
6994619 |
aatagcattttggaccaaactaatggtggcattatataactttcctatgtatgaatatatgaaagcatgagtgctttttaataacaataacatcttaaaa |
6994520 |
T |
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| Q |
218 |
ttgatttctcctttgaaaattctacgtgttaagacacaagtggatactgtcacacctc |
275 |
Q |
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| T |
6994519 |
ttgatttctcctttgaaaattctacgtgttaagacacaagtggatactgtcacacctc |
6994462 |
T |
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