View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20071_high_5 (Length: 633)
Name: NF20071_high_5
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20071_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 19 - 466
Target Start/End: Complemental strand, 39404590 - 39404143
Alignment:
| Q |
19 |
ataagttcgttaccaggttttttattatcaaaccaaatattgtattgaaaattttgaatgaaatgagttaagttagatattaaattttgaatcaaaattt |
118 |
Q |
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| T |
39404590 |
ataagttcgttaccaggttttttattatcaaaccaaatattgtattgaaaattttgaatgaaatgagttaagttagatattaaattttgaatgaaaattt |
39404491 |
T |
|
| Q |
119 |
ggcttgcagagcttctttgcaattatataactttttgattaacaactgaagttatttagtttatccaaattagagaagtcaattataannnnnnncgttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39404490 |
ggcttgcagagcttctttgcaattatataactttttgattaacaactgaagttatttagtttatccaaattagagaagtcaattataatttttttcgttt |
39404391 |
T |
|
| Q |
219 |
tagataagctcaaaaaattcgttactctttattatgattctttaacatatcacttaaatggctcacgctgttgaggggggaaaactgggctaagcaacaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39404390 |
tagataagctcaaaaaattcgttactctttattatgattctttaacatatcacttaaatggctcacgctgttgaggggggaaaactgggctaagcaacaa |
39404291 |
T |
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| Q |
319 |
ctgatcttcagtttaatatcaccacagactcttacattagaattttcttatacaatctccagcctaattttcctcatctcctttaccatcagcaacttgg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39404290 |
ctgatcttcagtttaatatcaccacagactcttacattagaattttcttatacaatctccagcctaattttcctcatctcctttaccatcagcaacttgg |
39404191 |
T |
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| Q |
419 |
agttatatatacttgtttaaatatatggacccactttccatgcaattc |
466 |
Q |
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| T |
39404190 |
agttatatatacttgtttaaatatatggacccactttccatgcaattc |
39404143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 545 - 633
Target Start/End: Complemental strand, 39404064 - 39403976
Alignment:
| Q |
545 |
gatgatatgctgctgcaatatatttttgggttaatggagaatttaattcggggttttgagtttagaacaaggatgaacataacaatgag |
633 |
Q |
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| T |
39404064 |
gatgatatgctgctgcaatatatttttgggttaatggagaatttgattcggggttttgagtttagaacaaggatgaacataacaatgag |
39403976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 303 - 417
Target Start/End: Complemental strand, 47757793 - 47757682
Alignment:
| Q |
303 |
ctgggctaagcaacaactgatcttcagtttaatatcaccacagactcttacattagaattttcttatacaatctccagcctaattttcctcatctccttt |
402 |
Q |
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||||||| |||||||||| ||||||||||||||||| ||| ||||| ||||||||| || || ||||||||||||||||||||| ||||||||||||| |
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| T |
47757793 |
ctgggctgagcaacaact---cttcagtttaatatcacaacaaactctaacattagaacttgctgatacaatctccagcctaatttgcctcatctccttt |
47757697 |
T |
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| Q |
403 |
accatcagcaacttg |
417 |
Q |
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| T |
47757696 |
accatcagcaacttg |
47757682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 146 - 205
Target Start/End: Complemental strand, 47758348 - 47758289
Alignment:
| Q |
146 |
taactttttgattaacaactgaagttatttagtttatccaaattagagaagtcaattata |
205 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
47758348 |
taactttttgattaacaattgaagttatttagtttatccaaattagagaagtcaaatata |
47758289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 249 - 301
Target Start/End: Complemental strand, 47758238 - 47758187
Alignment:
| Q |
249 |
attatgattctttaacatatcacttaaatggctcacgctgttgaggggggaaa |
301 |
Q |
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|||||||||||| |||||| |||| ||||||||||||||||||| |||||||| |
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| T |
47758238 |
attatgattctt-aacatagcactcaaatggctcacgctgttgaagggggaaa |
47758187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 47758448 - 47758376
Alignment:
| Q |
19 |
ataagttcgttaccaggttttttattatcaaaccaaatattgtattgaaaattttgaatgaaatgagttaagttag |
94 |
Q |
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||||||| ||||||| |||||||| || |||| || |||| |||||||||||||||||||| ||||||||||| |
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| T |
47758448 |
ataagttagttaccaagttttttaccat---accacatcttgtgttgaaaattttgaatgaaataagttaagttag |
47758376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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