View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20071_high_52 (Length: 287)
Name: NF20071_high_52
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20071_high_52 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 27332800 - 27332968
Alignment:
| Q |
1 |
ttaaaggatgatgaggttttggtgtatggtagttgtgaaatttaatgttagttgttagtagtagttttcaagttagttcatgaatattattatgtgacca |
100 |
Q |
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| T |
27332800 |
ttaaaggatgatgaggttttggtgtatggtagttgtgaaatttaatgttagttgttagtagtagttttcaagttagttcatgaatattattatgtgacca |
27332899 |
T |
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| Q |
101 |
accttattttttagtgaaagaaaaaatattgagtttgtgttgcacatagttataatttttccatttagt |
169 |
Q |
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| T |
27332900 |
accttattttttagtgaaagaaaaaatattgtgtttgtgttgcacatagttataatttttccatttagt |
27332968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 169 - 269
Target Start/End: Original strand, 27333271 - 27333371
Alignment:
| Q |
169 |
taaacatttggtatctctctctttaatttacttcatctagaaatgctacattattacatatataaagagaaataaaagaaaaattgttcaacaacatagt |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27333271 |
taaacatttggtatctctctctttaatttacttcatctagaaatgctacattattacatatataaagagaaataaaagaaaaattgttcaacaacatagt |
27333370 |
T |
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| Q |
269 |
t |
269 |
Q |
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| T |
27333371 |
t |
27333371 |
T |
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