View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20071_high_61 (Length: 246)
Name: NF20071_high_61
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20071_high_61 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 5373797 - 5374012
Alignment:
| Q |
19 |
acattgacaacctataattgctccacttcagcaaaattaaaaaatccttactttttataatttgttacattttcacaccgaaattaattgtttaatgagc |
118 |
Q |
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| T |
5373797 |
acattgaccacctataattgctccacttcagcaaaattaaaaaatccttactttttataatttgttacattttcacaccgaaattaattgtttaatgagc |
5373896 |
T |
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| Q |
119 |
tctaattaccgatgaattgttcagaagaattcgagttgaaactctgaatcgatnnnnnnnnnnnnnnnngaatcttcatcaatcatacacactcaacagt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5373897 |
tctaattaccgatgaattgttcagaagaattcgagttgatactctgaatcgataaaacaaaacaaaaaagaatcttcatcaatcatacacactcaacagt |
5373996 |
T |
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| Q |
219 |
tccaatccacaggttc |
234 |
Q |
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|||||||||||||||| |
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| T |
5373997 |
tccaatccacaggttc |
5374012 |
T |
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