View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20071_high_71 (Length: 235)
Name: NF20071_high_71
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20071_high_71 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 53474529 - 53474308
Alignment:
| Q |
1 |
cctagaaattgtccttcccagacaaaaagaggttttcttcatgtaatcaaccaaattcagttctcaccttctaaccaacctgaaagatgatgatttgaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
53474529 |
cctagaaattgtccttcccagacaaaaagaggttttcttcatgtaatcaaccaaattcagttctcaccttctaaccaacctgaaagattatgatttgaga |
53474430 |
T |
|
| Q |
101 |
agttttgtgacaaattttctctgggtttttcttttcacaatccccaaaatagatttagttgtaaaataaatagtagtagtaaaaatgaatgtgcaaaaat |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53474429 |
agttttgtgacaaattttctctgggtttttcttttcacaatccccaaaatagatttagttgtaaaataaatagtagtagtaaaaatgaatgtgcaaaaaa |
53474330 |
T |
|
| Q |
201 |
tcattattttatgattattatt |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
53474329 |
tcattattttatgattattatt |
53474308 |
T |
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