View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20071_high_72 (Length: 225)
Name: NF20071_high_72
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20071_high_72 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 39404590 - 39404394
Alignment:
| Q |
19 |
ataagttcgttaccaggttttttattatcaaaccaaatattgtattgaaaattttgaatgaaatgagttaagttagatattaaattttgaatcaaaattt |
118 |
Q |
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| T |
39404590 |
ataagttcgttaccaggttttttattatcaaaccaaatattgtattgaaaattttgaatgaaatgagttaagttagatattaaattttgaatgaaaattt |
39404491 |
T |
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| Q |
119 |
ggcttgcagagcttctttgcaattatataactttttgattaacaactgaagttatttagtttatccaaattagagaagtcaattataattttcttcg |
215 |
Q |
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| T |
39404490 |
ggcttgcagagcttctttgcaattatataactttttgattaacaactgaagttatttagtttatccaaattagagaagtcaattataatttttttcg |
39404394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 146 - 205
Target Start/End: Complemental strand, 47758348 - 47758289
Alignment:
| Q |
146 |
taactttttgattaacaactgaagttatttagtttatccaaattagagaagtcaattata |
205 |
Q |
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| T |
47758348 |
taactttttgattaacaattgaagttatttagtttatccaaattagagaagtcaaatata |
47758289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 47758448 - 47758376
Alignment:
| Q |
19 |
ataagttcgttaccaggttttttattatcaaaccaaatattgtattgaaaattttgaatgaaatgagttaagttag |
94 |
Q |
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||||||| ||||||| |||||||| || |||| || |||| |||||||||||||||||||| ||||||||||| |
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| T |
47758448 |
ataagttagttaccaagttttttaccat---accacatcttgtgttgaaaattttgaatgaaataagttaagttag |
47758376 |
T |
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