View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20071_high_76 (Length: 207)
Name: NF20071_high_76
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20071_high_76 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 10 - 193
Target Start/End: Complemental strand, 1907405 - 1907222
Alignment:
| Q |
10 |
agaagcataggcaatatcaaagcttcggattattgcagctgtttcaagcctaactttcattattgcaccacctgtttgagaagactagtggctgctatgc |
109 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1907405 |
agaatcatagacaatatcaaagcttcggattattgcagctgtttcaagcctaactttcattattgcaccacctgtttgagaagactagtggctgctatgc |
1907306 |
T |
|
| Q |
110 |
tatgtgaaagaggattcactaccaacctttgcacatcaagatggaaaaccacaaatgaatttccaggaggtgcatatataattc |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1907305 |
tatgtgaaagaggattcactaccaacctttgcacatcaagatggaaaaccacaaatgaatttccaggaggtgcatatataattc |
1907222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University