View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20071_low_10 (Length: 505)

Name: NF20071_low_10
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20071_low_10
NF20071_low_10
[»] chr1 (10 HSPs)
chr1 (1-385)||(51762796-51763174)
chr1 (8-379)||(51854760-51855128)
chr1 (3-385)||(51858415-51858793)
chr1 (62-385)||(51756620-51756933)
chr1 (442-488)||(51762121-51762167)
chr1 (202-265)||(51782803-51782866)
chr1 (204-262)||(51407546-51407604)
chr1 (192-385)||(51381319-51381512)
chr1 (202-250)||(51832377-51832425)
chr1 (347-383)||(51221082-51221118)
[»] chr6 (4 HSPs)
chr6 (56-385)||(4182865-4183190)
chr6 (56-385)||(4743709-4744034)
chr6 (210-250)||(19119075-19119115)
chr6 (210-250)||(19126369-19126409)
[»] chr3 (3 HSPs)
chr3 (210-250)||(23197024-23197064)
chr3 (202-260)||(2492086-2492144)
chr3 (202-260)||(2631361-2631419)
[»] chr4 (1 HSPs)
chr4 (201-250)||(20016184-20016233)


Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 51763174 - 51762796
Alignment:
Q  1 tgtgagtgacactgttaattggttgttatttagtgatcatggtttttggtgggttattgtttctcttgctttggagaatgagttgtatcaagagctttct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  51763174 tgtgagtgacactgttaattggttgttatttagtgatcatggtttttggtgggttattgtttctcttggtttggagaatgagttgtatcaagagctttct 51763075  T
Q  101 caccctcattatgattaccaacctggaaatggcataattaccttgggggtgttgagggattgtttgcgcannnnnnnctaatagtgccagcttttcttat 200  Q
    ||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||| |||       ||||||||| |||||||||||||    
T  51763074 caccctcattatgattaccaacctggaaatggcataatta------gggtgttgagggattgtttgtgcatttttttctaatagtgacagcttttcttat 51762981  T
Q  201 ttttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctcaaataggagattgtggtttttattccttaaccaaggcat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  51762980 ttttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctcaaataggagatcgtggtttttattccttaaccaaggcat 51762881  T
Q  301 tatatatatctgaagatgaccaagtgctgatgtatattctgaagatggggaaatttagtttggttgtctatggttccataaatga 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51762880 tatatatatctgaagatgaccaagtgctgatgtatattctgaagatggggaaatttagtttggttgtctatggttccataaatga 51762796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 8 - 379
Target Start/End: Original strand, 51854760 - 51855128
Alignment:
Q  8 gacactgttaattggttgttatttagtgatcatggtttttg-gtgggttattgtttctcttgctttggagaatgagttgtatcaagagctttctcaccct 106  Q
    ||||| |||||||||||| ||| |  ||||| | ||||||| | |||| ||||||||||||| ||||||||||| ||||||||||||| |||||||||||    
T  51854760 gacacggttaattggttggtatatgatgatcctagtttttgagagggtcattgtttctcttgatttggagaatgggttgtatcaagagttttctcaccct 51854859  T
Q  107 cattatgattaccaacctggaaatggcataattaccttgggggtgttgagggattgtttgcgcannnnnnnctaatagtgccagcttttcttatttttgg 206  Q
    | |||||| ||| |||||| |||| ||||   |||||||||||||||||||||||||||| |||       ||| |||||  |  |||||| || |||||    
T  51854860 ctttatgactacgaacctgcaaatcgcat---taccttgggggtgttgagggattgtttgtgcacttttt-ctagtagtgagaagttttctgatgtttgg 51854955  T
Q  207 atcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctcaaataggagattgtggtttttattccttaaccaaggcattatata 306  Q
    |||||||| ||||||||||||| | |||||||||||||||||||| ||||||||||||| ||||  ||||||| ||||  ||  |||||  |||||||||    
T  51854956 atcatgaaagaatatggaaatgtagaatcttggactaaattgttatgtgttcctcaaatgggaggctgtggttgttatatctataccaaaccattatata 51855055  T
Q  307 tatctgaagatgaccaagtgctgatgtatattctgaagatggggaaatttagtttggttgtctatggttccat 379  Q
    |||||||||||||||||||||||| |||| || | ||||||||||| |||||||||| |||||||| ||||||    
T  51855056 tatctgaagatgaccaagtgctgacgtattttttcaagatggggaagtttagtttggctgtctatgattccat 51855128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 3 - 385
Target Start/End: Original strand, 51858415 - 51858793
Alignment:
Q  3 tgagtgacactgttaattggttgttatttagtgatcatggtttttggtgggttattgtttctcttgctttggagaatgagttgtatcaagagctttctca 102  Q
    ||||||||||||||||||||||| ||| |  ||||| | |||||  | |||| ||||||||||||| ||||||||||||||||| ||||||||||| |||    
T  51858415 tgagtgacactgttaattggttggtatatcatgatcgtagttttgcgagggtcattgtttctcttgatttggagaatgagttgtgtcaagagctttttca 51858514  T
Q  103 ccctcattatgattaccaacctggaaatggcataattaccttgggggtgttgagggattgtttgcgcannnnnnnctaatagtgccagcttttcttattt 202  Q
    ||||| |||| ||||| ||||||||| | ||||   | ||||||||||| |||||||||| ||| |||       || |||||| ||  |||||| || |    
T  51858515 ccctctttataattacaaacctggaacttgcat---tgccttgggggtgctgagggattgcttgtgcatttttt-ctcatagtgacaagttttctgatgt 51858610  T
Q  203 ttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctcaaataggagattgtggtttttattccttaaccaaggcatta 302  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||| |||||||| ||||  ||  ||||| | ||||    
T  51858611 ttggatcatgaaggaatatggaaatgtagaatcttggactaaattgttaagtgttcctcaaatgggaggttgtggttgttatatctataccaaagtatta 51858710  T
Q  303 tatatatctgaagatgaccaagtgctgatgtatattctgaagatggggaaatttagtttggttgtctatggttccataaatga 385  Q
    |||||||||||||||| || | ||||||| ||| || | ||||  ||||||||||| |||| |||||||| |||||| |||||    
T  51858711 tatatatctgaagatggcctaatgctgatatattttttcaagagagggaaatttaggttggctgtctatgattccattaatga 51858793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 62 - 385
Target Start/End: Complemental strand, 51756933 - 51756620
Alignment:
Q  62 tctcttgctttggagaatgagttgtatcaagagctttctcaccctcattatgattaccaacctggaaatggcataattaccttgggggtgttgagggatt 161  Q
    ||||||| ||||||||| ||||||| |||||||||||  ||||||| || |||| ||||||  | ||||  ||| ||   ||||||||||||||||||||    
T  51756933 tctcttgatttggagaaggagttgtctcaagagcttttgcaccctctttgtgataaccaacaagaaaattacattat---cttgggggtgttgagggatt 51756837  T
Q  162 gtttgcgcannnnnnnctaatagtgccagcttttcttatttttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctc 261  Q
    ||||| |||       || | |||| ||  |||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51756836 gtttgtgcatttttt-ctcaaagtgacaagttttttgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctc 51756738  T
Q  262 aaataggagattgtggtttttattccttaaccaaggcattatatatatctgaagatgaccaagtgctgatgtatattctgaagatggggaaatttagttt 361  Q
    |||| |||||      |  ||||  ||  |||||  |||||||||| ||||| ||||||||||||||||||||| || |||||| ||| |||||||||||    
T  51756737 aaatgggaga------tcattatatctataccaaaccattatatatttctgaggatgaccaagtgctgatgtattttgtgaagaggggaaaatttagttt 51756644  T
Q  362 ggttgtctatggttccataaatga 385  Q
    || | |||||| ||||||||||||    
T  51756643 ggctttctatgattccataaatga 51756620  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 442 - 488
Target Start/End: Complemental strand, 51762167 - 51762121
Alignment:
Q  442 aatggaatggattagatggatttggtgggcatagttctaatttaatt 488  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  51762167 aatggaatggattagatggatttggtgggcatagttctaatttaatt 51762121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 202 - 265
Target Start/End: Original strand, 51782803 - 51782866
Alignment:
Q  202 tttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctcaaat 265  Q
    ||||||| ||||||||||||||||||| ||||||||||| |||||| |||||||||||| ||||    
T  51782803 tttggattatgaaggaatatggaaatgaacaatcttggaataaattattaagtgttcctaaaat 51782866  T

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Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 204 - 262
Target Start/End: Complemental strand, 51407604 - 51407546
Alignment:
Q  204 tggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctca 262  Q
    ||||| |||||||||||||| |||| ||| |||||||||||||||||||||||||||||    
T  51407604 tggattatgaaggaatatgggaatgaacagtcttggactaaattgttaagtgttcctca 51407546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 192 - 385
Target Start/End: Complemental strand, 51381512 - 51381319
Alignment:
Q  192 ttttcttatttttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctcaaataggagattgtggtttttattccttaa 291  Q
    |||||| || ||||||| ||||| ||||||||||||| | | ||||||||||||||||| ||| ||||| | || | || | ||||||||  |  ||       
T  51381512 ttttctgatatttggattatgaaagaatatggaaatgaagagtcttggactaaattgttcagtattccttacatggaaggtcgtggttttcttggctatt 51381413  T
Q  292 ccaaggcattatatatatctgaagatgaccaagtgctgatgtatattctgaagatggggaaatttagtttggttgtctatggttccataaatga 385  Q
     | || || ||||||| || ||||||||||||||  ||||| |  |||| |||||||||||||| |||||| ||||||||| ||||| ||||||    
T  51381412 gccagtcagtatatatttcggaagatgaccaagttttgatgcagtttctaaagatggggaaattcagtttgcttgtctatgattccaaaaatga 51381319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 51832377 - 51832425
Alignment:
Q  202 tttggatcatgaaggaatatggaaatggacaatcttggactaaattgtt 250  Q
    ||||||| ||||| ||||||||||||| |||||||||||||||||||||    
T  51832377 tttggataatgaaagaatatggaaatgaacaatcttggactaaattgtt 51832425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 383
Target Start/End: Complemental strand, 51221118 - 51221082
Alignment:
Q  347 ggggaaatttagtttggttgtctatggttccataaat 383  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  51221118 ggggaaatttagtttggttatctatgattccataaat 51221082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 5e-60; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 56 - 385
Target Start/End: Complemental strand, 4183190 - 4182865
Alignment:
Q  56 attgtttctcttgctttggagaatgagttgtatcaagagctttctcaccctcattatgattaccaacctggaaatggcataattaccttgggggtgttga 155  Q
    ||||||||||||  |||| |||| ||||  |||||||||||||||||||||| |||||||  |||| ||| || || ||    |||||||||| ||||||    
T  4183190 attgtttctcttcatttgcagaaggagtcttatcaagagctttctcaccctctttatgatatccaatctgaaactgacaa---taccttggggatgttga 4183094  T
Q  156 gggattgtttgcgcannnnnnnctaatagtgccagcttttcttatttttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtg 255  Q
    ||||||||||| |||       ||||||||| ||  |||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4183093 gggattgtttgtgcatttttt-ctaatagtgacaagttttttgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtg 4182995  T
Q  256 ttcctcaaataggagattgtggtttttattccttaaccaaggcattatatatatctgaagatgaccaagtgctgatgtatattctgaagatggggaaatt 355  Q
    |||||||||| ||||||  |  | | |||  |||||| ||  |||||||||| |||||  |||||||||||||||||||| || |||||| | |||||||    
T  4182994 ttcctcaaatgggagatgcttatatatatatcttaactaaaccattatatatttctgagcatgaccaagtgctgatgtattttatgaagaggaggaaatt 4182895  T
Q  356 tagtttggttgtctatggttccataaatga 385  Q
    |||||||| |||||||| ||||||||||||    
T  4182894 tagtttggctgtctatgattccataaatga 4182865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 56 - 385
Target Start/End: Complemental strand, 4744034 - 4743709
Alignment:
Q  56 attgtttctcttgctttggagaatgagttgtatcaagagctttctcaccctcattatgattaccaacctggaaatggcataattaccttgggggtgttga 155  Q
    ||||||||||||  |||| |||| ||||  ||||||||| |||||||||||| |||||||  |||| ||| || |  ||    |||||||||||||||||    
T  4744034 attgtttctcttcatttgcagaaggagtcttatcaagagttttctcaccctctttatgatatccaatctgaaacttacaa---taccttgggggtgttga 4743938  T
Q  156 gggattgtttgcgcannnnnnnctaatagtgccagcttttcttatttttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtg 255  Q
    ||||||||||| |||       ||||||||| ||  |||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4743937 gggattgtttgtgcatttttt-ctaatagtgacaagttttttgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtg 4743839  T
Q  256 ttcctcaaataggagattgtggtttttattccttaaccaaggcattatatatatctgaagatgaccaagtgctgatgtatattctgaagatggggaaatt 355  Q
    |||||||||| ||||||  |  | | |||  |||||| ||  |||||||||| |||||  |||||||||||||||||||| || |||||| | |||||||    
T  4743838 ttcctcaaatgggagatgcttatatatatatcttaactaaaccattatatatttctgagcatgaccaagtgctgatgtattttatgaagaggaggaaatt 4743739  T
Q  356 tagtttggttgtctatggttccataaatga 385  Q
    |||||||| |||||||| ||||||||||||    
T  4743738 tagtttggctgtctatgattccataaatga 4743709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 19119075 - 19119115
Alignment:
Q  210 atgaaggaatatggaaatggacaatcttggactaaattgtt 250  Q
    ||||||||||||||||||| | | |||||||||||||||||    
T  19119075 atgaaggaatatggaaatgaagagtcttggactaaattgtt 19119115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 19126369 - 19126409
Alignment:
Q  210 atgaaggaatatggaaatggacaatcttggactaaattgtt 250  Q
    ||||||||||||||||||| | | |||||||||||||||||    
T  19126369 atgaaggaatatggaaatgaagagtcttggactaaattgtt 19126409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 23197024 - 23197064
Alignment:
Q  210 atgaaggaatatggaaatggacaatcttggactaaattgtt 250  Q
    ||||||||||||||||||| | |||||||||||||||||||    
T  23197024 atgaaggaatatggaaatgaagaatcttggactaaattgtt 23197064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 202 - 260
Target Start/End: Original strand, 2492086 - 2492144
Alignment:
Q  202 tttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcct 260  Q
    ||||||| |||||||| ||||||||| || | ||||||||||||||||  |||||||||    
T  2492086 tttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgttcct 2492144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 202 - 260
Target Start/End: Original strand, 2631361 - 2631419
Alignment:
Q  202 tttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcct 260  Q
    ||||||| ||||||||||||||||||  | | ||||||||||||||||  |||||||||    
T  2631361 tttggattatgaaggaatatggaaatcaagagtcttggactaaattgtgcagtgttcct 2631419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 250
Target Start/End: Complemental strand, 20016233 - 20016184
Alignment:
Q  201 ttttggatcatgaaggaatatggaaatggacaatcttggactaaattgtt 250  Q
    ||||||||||||||||||||||||| |  | | |||||||||||||||||    
T  20016233 ttttggatcatgaaggaatatggaattcaagagtcttggactaaattgtt 20016184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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