View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20071_low_13 (Length: 478)
Name: NF20071_low_13
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20071_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 413; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 19 - 467
Target Start/End: Original strand, 3531923 - 3532371
Alignment:
| Q |
19 |
accttgtgcagtccataaagcccaatccaagtccaccccagcaagataagctaacatacaagataagaatctttgattcttgttatccatatcagtcatg |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
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| T |
3531923 |
accttgtgcagtccataaagcccaatccaagtccaccccagcaagataagctaacatacatgacaagaatctttgattcttgtcatccatatcagtcatg |
3532022 |
T |
|
| Q |
119 |
tctaaaccaaattcactcataaccaatggattagggttagaaccactcattagaaatccagccttatcattcaatccattcattacattggcacattttt |
218 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3532023 |
tctaaaccaaattcactcataaccaatggattagggttagaaccactcattagaaatccagccctatcattcaatccattcattacattggcacattttt |
3532122 |
T |
|
| Q |
219 |
ggttcaatggtttcacaatccaatcctttggtgacccagttgaccatgcataggaatgtacctcgtacaccaatttgtctcctatgcttatgtttagagg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3532123 |
ggttcaatggtttcacaatccaatcctttggtgacccagttgaccatgcataggaatgtacctcgtacaccaatttgtctcctatgcttgtgtttagagg |
3532222 |
T |
|
| Q |
319 |
atttgttttcaagaagcttaaatcagtgtcatagttaaagccagaaacaaatactagaacatttggattttctttgtgaactgttgttgctccttggctc |
418 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3532223 |
atttgttttcaagaagcttaaatcagtgtcatagttaaagccagaaacaaatactagaacatttggattttctttgtgaactgttgttgctccttggctc |
3532322 |
T |
|
| Q |
419 |
atgtacttctgccaactgcttatgttttgacttggacctcttagttcat |
467 |
Q |
| |
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||||||||||||||| || ||||||||||| ||||||||||||||||| |
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| T |
3532323 |
atgtacttctgccaattgtctatgttttgacctggacctcttagttcat |
3532371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 467
Target Start/End: Original strand, 3527484 - 3527944
Alignment:
| Q |
19 |
accttgtgcagtccataaagcccaatccaagtccaccccagcaagataagctaacatacaagataagaatctttgatt------------cttgttatcc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||| ||||| ||| |
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| T |
3527484 |
accttgtgcagtccataaagcccaatccaagtcaaccccagcaagataagctaacatacatgacaagaatctttgattgaatgtttgattcttgtcatca |
3527583 |
T |
|
| Q |
107 |
atatcagtcatgtctaaaccaaattcactcataaccaatggattagggttagaaccactcattagaaatccagccttatcattcaatccattcattacat |
206 |
Q |
| |
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||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||| |
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| T |
3527584 |
atagcagtcaagtcagcaccaaattcactcataaccaatggattagggttagaaccactcattagaaaccctgccttatcattcaaattattcattacat |
3527683 |
T |
|
| Q |
207 |
tggcacatttttggttcaatggtttcacaatccaatcctttggtgacccagttgaccatgcataggaatgtacctcgtacaccaatttgtctcctatgct |
306 |
Q |
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| |||||||||| ||||||||||| |||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3527684 |
tagcacattttttgttcaatggttgtttgtcccaatcacttcgatccccagttgaccatgcataggaatgtacctcgtacaccaatttgtctcctatgct |
3527783 |
T |
|
| Q |
307 |
tatgtttagaggatttgttttcaagaagcttaaatcagtgtcatagttaaagccagaaacaaatactagaacatttggattttctttgtgaactgttgtt |
406 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
3527784 |
tgtgtttagaggatttgttttcaagaagcttaaatcaatgtcatagttaaagccagaaacaaatacaagaacattgggattttctttgtgaactgttgtt |
3527883 |
T |
|
| Q |
407 |
gctccttggctcatgtacttctgccaactgcttatgttttgacttggacctcttagttcat |
467 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3527884 |
gctccttggctcatgtacttctgccaactgcttatgttttgacttggacctcttagttcat |
3527944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 467
Target Start/End: Original strand, 3549204 - 3549656
Alignment:
| Q |
19 |
accttgtgcagtccataaagcccaatccaagtccaccccagcaagataagctaacatacaagataagaatctttgattcttgttatccatatcagtcatg |
118 |
Q |
| |
|
||||||||||| ||| ||||||||||| || ||||| ||| |||||||||| || ||||| || || |||| ||||| | || ||| |||| |||| |
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|
| T |
3549204 |
accttgtgcagcccacaaagcccaatctaaatccactccaccaagataagccaaaatacatgacaaatatctctgattttggtcatctatattttccatg |
3549303 |
T |
|
| Q |
119 |
tctaaaccaaattcactcataaccaatggattagggttagaaccactcattagaaatccagccttatcattcaatccattcattacattg----gcacat |
214 |
Q |
| |
|
|| | |||||||||| |||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||||||||||||||| |||||| |
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| T |
3549304 |
tccataccaaattcagtcataaccaatggattagggttagaaccactcatgagaaaccctgccttgtcattcaatccattcattacattaattagcacat |
3549403 |
T |
|
| Q |
215 |
ttttggttcaatggtttcacaatccaatcctttggtgacccagttgaccatgcataggaatgtacctcgtacaccaatttgtctcctatgcttatgttta |
314 |
Q |
| |
|
|||| |||| ||||| | |||||||||| ||||||||||| |||| ||||||||||||||||| || ||||||||||||||||||||| | | |||| |
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|
| T |
3549404 |
tttttattcactggttgctcaatccaatcttttggtgaccctattgatcatgcataggaatgtacttcatacaccaatttgtctcctatgttaacattta |
3549503 |
T |
|
| Q |
315 |
gaggatttgttttcaagaagcttaaatcagtgtcatagttaaagccagaaacaaatactagaacatttggattttctttgtgaactgttgttgctccttg |
414 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||| ||||||| ||||||||| ||||||| |
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| T |
3549504 |
gaggctttgtcttcaagaagcttaaatcagtgtcataatttaagccagaaacaaaaactagaacatttggatttgctttgtggactgttgttactccttg |
3549603 |
T |
|
| Q |
415 |
gctcatgtacttctgccaactgcttatgttttgacttggacctcttagttcat |
467 |
Q |
| |
|
||||||||| || | |||| || ||||||||| |||||||| |||||||| |
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|
| T |
3549604 |
gctcatgtatttgtaccaattgtcattgttttgacctggacctcgtagttcat |
3549656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 18 - 467
Target Start/End: Original strand, 3554794 - 3555243
Alignment:
| Q |
18 |
caccttgtgcagtccataaagcccaatccaagtccaccccagcaagataagctaacatacaagataagaatctttgattcttgttatccatatcagtcat |
117 |
Q |
| |
|
|||||||||||| ||| || ||||||||||| ||||| || ||||||| || ||||||||||| |||||| ||| |||| ||| | | ||| ||| |
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| T |
3554794 |
caccttgtgcagcccacaatgcccaatccaaatccacacctacaagatatgccaacatacaagacaagaatttttcattcatgtcagtcttattttccat |
3554893 |
T |
|
| Q |
118 |
gtctaaaccaaattcactcataaccaatggattagggttagaaccactcattagaaatccagccttatcattcaatccattcattacattggcacatttt |
217 |
Q |
| |
|
|| | |||||||||||||||||||||||| |||||||||||||||||||| ||||| || |||||||||||||| |||||||||||| ||||||||| |
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|
| T |
3554894 |
gttgataccaaattcactcataaccaatggtttagggttagaaccactcatgagaaaccctgccttatcattcaaattattcattacattagcacatttt |
3554993 |
T |
|
| Q |
218 |
tggttcaatggtttcacaatccaatcctttggtgacccagttgaccatgcataggaatgtacctcgtacaccaatttgtctcctatgcttatgtttagag |
317 |
Q |
| |
|
| ||||||||||| | |||||| || || |||| ||||||||||||||||||||||||||||||||||||||| |||||| | | ||||||| |
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| T |
3554994 |
ttgttcaatggttgcttgtcccaatcacttcgttccccacttgaccatgcataggaatgtacctcgtacaccaatttgttccctatgttaacatttagag |
3555093 |
T |
|
| Q |
318 |
gatttgttttcaagaagcttaaatcagtgtcatagttaaagccagaaacaaatactagaacatttggattttctttgtgaactgttgttgctccttggct |
417 |
Q |
| |
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| ||||| |||||||||||||||||||||||||| || |||||||||||||| |||||||||| ||||||| |||| ||||| ||||| ||||||||||| |
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|
| T |
3555094 |
gctttgtcttcaagaagcttaaatcagtgtcataatttaagccagaaacaaagactagaacatctggatttgctttatgaacagttgtagctccttggct |
3555193 |
T |
|
| Q |
418 |
catgtacttctgccaactgcttatgttttgacttggacctcttagttcat |
467 |
Q |
| |
|
||||||||| |||||| || || |||||| |||||||||||||||||| |
|
|
| T |
3555194 |
catgtacttgtgccaattgttttcgttttgttttggacctcttagttcat |
3555243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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