View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20071_low_14 (Length: 475)

Name: NF20071_low_14
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20071_low_14
NF20071_low_14
[»] chr1 (3 HSPs)
chr1 (61-458)||(24126540-24126937)
chr1 (53-325)||(24144758-24145028)
chr1 (360-452)||(1882926-1883018)
[»] chr7 (2 HSPs)
chr7 (94-284)||(43532713-43532903)
chr7 (402-441)||(35168362-35168401)
[»] chr2 (3 HSPs)
chr2 (388-442)||(36886004-36886058)
chr2 (200-233)||(33718638-33718671)
chr2 (364-440)||(17213777-17213853)
[»] chr6 (1 HSPs)
chr6 (399-440)||(33433783-33433824)
[»] chr3 (1 HSPs)
chr3 (403-458)||(54640653-54640708)
[»] chr8 (1 HSPs)
chr8 (390-458)||(39560359-39560428)
[»] chr4 (2 HSPs)
chr4 (368-432)||(15026787-15026851)
chr4 (388-440)||(39177838-39177890)


Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 61 - 458
Target Start/End: Original strand, 24126540 - 24126937
Alignment:
Q  61 aagccaatggttttatattgtatgcacgaaaacaggtgccaagatactatgattggcggttcatttgttcgtggagtatccggtggagagaggaagagag 160  Q
    |||||||| ||||| ||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  24126540 aagccaatagttttgtattgtatgcatgaaaacaggtgccaagatactatgatcggtggttcatttgttcgtggagtatccggtggagagaggaagagag 24126639  T
Q  161 tttgtattggcaatgagattataatcaatccttccattctgtttcttgatgaaccaacatctggtttggattcaacaaccgccttgaagatcgttcagat 260  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24126640 tttgtattggtaatgagattataatcaatccttccattctgtttcttgatgaaccaacatctggtttggattcgacaaccgccttgaagatcgttcagat 24126739  T
Q  261 gctgcaagacatagcagaggtattattaatttgttcgcattgcctctcttcatcattgataaagactcagcctagtgtccatagcttatcaaatttgatt 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24126740 gctgcaagacatagcagaggtattattaatttgttcgcattgcctctcttcatcattgataaagactcagcctagtgtccatagcttatcaaatttgatt 24126839  T
Q  361 ttaggatttaattcatatacattgtttgtgtaaatatcttttacactatcaatcaatcttaatcatcagatcattaaaaaatttgactttaaacataa 458  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24126840 ttaggatttaattcatatacattgtttgtgtaaatatcttttacactatcaatcaatcttaatcatcagatcattaaaaaatttgactttaaacataa 24126937  T

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Target: chr1; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 53 - 325
Target Start/End: Original strand, 24144758 - 24145028
Alignment:
Q  53 agttataaaagccaatggttttatattgtatgcacgaaaacaggtgccaagatactatgattggcggttcatttgttcgtggagtatccggtggagagag 152  Q
    ||||||| |||||||| ||||| ||||||||||| ||||||||||||||| ||||||||||||| | ||| |||||||  ||| |||| |||||||||||    
T  24144758 agttatagaagccaatagttttgtattgtatgcatgaaaacaggtgccaaaatactatgattggtgattcgtttgttcccggattatctggtggagagag 24144857  T
Q  153 gaagagagtttgtattggcaatgagattataatcaatccttccattctgtttcttgatgaaccaacatctggtttggattcaacaaccgccttgaagatc 252  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||     
T  24144858 gaagagagtttgtattggcaatgagatcataatcaatccttccattctgtttcttgatgaaccaacatctggtttggattcaacaaccgctttgaagatt 24144957  T
Q  253 gttcagatgctgcaagacatagcagaggtattattaatttgttcgcattgcctctcttcatcattgataaaga 325  Q
    ||||||||| |||||||||| ||| ||||||||||||||||||  |||| ||||||||||| |||||||||||    
T  24144958 gttcagatgttgcaagacatggcaaaggtattattaatttgtt-tcatt-cctctcttcatgattgataaaga 24145028  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 360 - 452
Target Start/End: Complemental strand, 1883018 - 1882926
Alignment:
Q  360 tttaggatttaattcatatacattgtttgtgtaaatatcttttacactatcaatcaatcttaatcatcagatcattaaaaaatttgactttaa 452  Q
    |||| ||||||||| |||||||||||  |||||||  |  |||||||| ||||||| || |||| |||| |||||| ||| |||||| |||||    
T  1883018 tttatgatttaatttatatacattgtcggtgtaaaagttctttacactgtcaatcagtcataattatcaaatcattgaaacatttgattttaa 1882926  T

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Target: chr7 (Bit Score: 111; Significance: 8e-56; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 94 - 284
Target Start/End: Complemental strand, 43532903 - 43532713
Alignment:
Q  94 aggtgccaagatactatgattggcggttcatttgttcgtggagtatccggtggagagaggaagagagtttgtattggcaatgagattataatcaatcctt 193  Q
    ||||||||||| |||||||| || ||||| ||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  43532903 aggtgccaagacactatgataggaggttcctttgtccgaggagtatctggtggagagaggaagagagtttgtattggaaatgagattataatcaatcctt 43532804  T
Q  194 ccattctgtttcttgatgaaccaacatctggtttggattcaacaaccgccttgaagatcgttcagatgctgcaagacatagcagaggtatt 284  Q
    |  ||||||||||||||||||||||||||||||||||||| ||||| |||||||  || || |||||||| || || ||||| ||||||||    
T  43532803 ctcttctgtttcttgatgaaccaacatctggtttggattctacaacagccttgagaatagtccagatgctacatgatatagctgaggtatt 43532713  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 441
Target Start/End: Complemental strand, 35168401 - 35168362
Alignment:
Q  402 tacactatcaatcaatcttaatcatcagatcattaaaaaa 441  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  35168401 tacactatcaatcaattataatcatcagatcattaaaaaa 35168362  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 442
Target Start/End: Original strand, 36886004 - 36886058
Alignment:
Q  388 gtgtaaatatcttttacactatcaatcaatcttaatcatcagatcattaaaaaat 442  Q
    ||||||| || |||||||||||||||||||| ||||| |||| ||||||||||||    
T  36886004 gtgtaaagatattttacactatcaatcaatcataatcgtcaggtcattaaaaaat 36886058  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 233
Target Start/End: Original strand, 33718638 - 33718671
Alignment:
Q  200 tgtttcttgatgaaccaacatctggtttggattc 233  Q
    ||||||||||||||||||| ||||||||||||||    
T  33718638 tgtttcttgatgaaccaacttctggtttggattc 33718671  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 440
Target Start/End: Complemental strand, 17213853 - 17213777
Alignment:
Q  364 ggatttaattcatatacattgtttgtgtaaatatcttttacactatcaatcaatcttaatcatcagatcattaaaaa 440  Q
    ||||||||||||||||||||||  ||||||| ||  |||| ||| |||||||||| ||||  ||| ||| |||||||    
T  17213853 ggatttaattcatatacattgtcagtgtaaagatagtttatactgtcaatcaatcataattgtcaaatcgttaaaaa 17213777  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 399 - 440
Target Start/End: Original strand, 33433783 - 33433824
Alignment:
Q  399 ttttacactatcaatcaatcttaatcatcagatcattaaaaa 440  Q
    ||||||||| |||||||||| |||||||||||||||||||||    
T  33433783 ttttacactctcaatcaatcgtaatcatcagatcattaaaaa 33433824  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 458
Target Start/End: Original strand, 54640653 - 54640708
Alignment:
Q  403 acactatcaatcaatcttaatcatcagatcattaaaaaatttgactttaaacataa 458  Q
    ||||||| |||||||| ||||||| |||| ||||||||  ||||||||||||||||    
T  54640653 acactattaatcaatcataatcatgagatgattaaaaacattgactttaaacataa 54640708  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 458
Target Start/End: Complemental strand, 39560428 - 39560359
Alignment:
Q  390 gtaaatatcttttacactatcaatcaatcttaatcatcagatcattaaaaa-atttgactttaaacataa 458  Q
    |||||||| |||||||||| || |||||| |||||| || |||||||||||  ||||||||||| |||||    
T  39560428 gtaaatattttttacactaacagtcaatcgtaatcaccatatcattaaaaatgtttgactttaatcataa 39560359  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 432
Target Start/End: Complemental strand, 15026851 - 15026787
Alignment:
Q  368 ttaattcatatacattgtttgtgtaaatatcttttacactatcaatcaatcttaatcatcagatc 432  Q
    ||||||||||||| ||||| ||||||| || ||||||||  ||| |||||| ||||| |||||||    
T  15026851 ttaattcatatacgttgttggtgtaaagattttttacaccgtcagtcaatcgtaatcgtcagatc 15026787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 440
Target Start/End: Original strand, 39177838 - 39177890
Alignment:
Q  388 gtgtaaatatcttttacactatcaatcaatcttaatcatcagatcattaaaaa 440  Q
    ||||||| || |||||||| ||||||||||| ||| || ||||||||||||||    
T  39177838 gtgtaaagatgttttacaccatcaatcaatcataaccaccagatcattaaaaa 39177890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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