View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20071_low_17 (Length: 471)
Name: NF20071_low_17
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20071_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 16 - 395
Target Start/End: Original strand, 43831829 - 43832223
Alignment:
| Q |
16 |
gggagataatagtcaaagcaagacccatttttgcagcaaatataatcttccttggatcagaccgacccatttgacatgccttgttagcaataccctctat |
115 |
Q |
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| T |
43831829 |
gggagataatagtcaaagcaagacccatttttgcggcaaatataatcttccttggatcagaccgacccatttgacatgccttgttagcaataccctccat |
43831928 |
T |
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| Q |
116 |
tgtcttcaaacacttcatcatcattgatgtttccacttgttcttcattcaaacaaattcctatatgagaataatcatgatcaaccttcacggagagaagt |
215 |
Q |
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| T |
43831929 |
tgtcttcaaacacttcatcatcattgatgtttccacttgttcttcattcaaacaaattcctatatgagaataatcatgatcaaccttcacggagagaagt |
43832028 |
T |
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| Q |
216 |
ttctcttcattctcagctaagccgttatttaccaactttgtagccatgccaagcaatgagagagaaaagtgatgaacatgtatacaaggtgtcgtacatg |
315 |
Q |
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| T |
43832029 |
ttctcttcatcctcagctaagccgttatttaccaactttgtagccatgccaagcaatgagagagaaaagtgatgaacatgtatacaaggtgtcgtacatg |
43832128 |
T |
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| Q |
316 |
ttatt---------------ataacctaatggaataggaacagatttaccaatattatcggaacatcgtaacaaacttaagctatatacgtaata |
395 |
Q |
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| T |
43832129 |
ttattatatatacacgtaaaataacctaatggaataggaacagatttaccaatattatcggaacatcgtaacaaacttaagctgtatacgtaata |
43832223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 43816925 - 43816996
Alignment:
| Q |
16 |
gggagataatagtcaaagcaagacccatttttgcagcaaatataatcttccttggatcagaccgacccattt |
87 |
Q |
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| T |
43816925 |
gggagataatagtcaaagcaagacccattttagcagcaaaaatgatctttcttggatcagaacgacccattt |
43816996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 43824861 - 43824932
Alignment:
| Q |
16 |
gggagataatagtcaaagcaagacccatttttgcagcaaatataatcttccttggatcagaccgacccattt |
87 |
Q |
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||||||||| | |||||||||||||||||| ||||| || || ||||||||||||||||| |||||||||| |
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| T |
43824861 |
gggagataagggccaaagcaagacccattttagcagcgaaaatgatcttccttggatcagaacgacccattt |
43824932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 458
Target Start/End: Original strand, 43832222 - 43832251
Alignment:
| Q |
429 |
taagttatatgaattccactattatatgtg |
458 |
Q |
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| T |
43832222 |
taagttatatgaattccactattatatgtg |
43832251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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