View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20071_low_18 (Length: 468)
Name: NF20071_low_18
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20071_low_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 426; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 16 - 449
Target Start/End: Original strand, 15313989 - 15314422
Alignment:
| Q |
16 |
atcaatgtaatcaagttttgaagtttcaataatgtttcaggtatttgtccatggaaacgatttgcttgaagatttaaataagcaaggccacttatattga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15313989 |
atcaatgtaatcaagttttgaagtttcaataatgtttcaggtatttgtccatggaaacgatttgcttgaagatttaaataagcaaggccacttatattga |
15314088 |
T |
|
| Q |
116 |
acaaccaaataggcaagtcagagaagaaatcattttgagaaagatcaagatattcaagggaagtgaagttggcatatagaagagactgactagcactttt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15314089 |
acaaccaaataggcaagtcagagaagaaatcattttgagaaagatcaagatattcaagggaagtgaagttggcatatagaagagactgactagcactttt |
15314188 |
T |
|
| Q |
216 |
aagctgacacttatacaaatgtaactcagaaagtgaaggaaacatagtcaatatttgaagccaacgagtttccctatggagatcaatggagtccaggttg |
315 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15314189 |
aagctgacacctatacaaatgtaactcagaaagtgaaggaaacatagtcaatatttgaagccaacgagtttccctatggagatcaatggagtccaggttg |
15314288 |
T |
|
| Q |
316 |
agaaattgtaaggatgatgagagacgaagaagccatctcaaatcattaatcacaagattctcattttgagacaagtcaagatgaaaaacattggaaaagt |
415 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15314289 |
agaaattgtaaggatgacgagagacgaagaagccatctcaaatcattaatcacaagattctcattttgagacaagtcaagatgaaaaacattggaaaagt |
15314388 |
T |
|
| Q |
416 |
ttccactcccatgagaagtgttaactgatgacaa |
449 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
15314389 |
ttccactcccatgagaagtgttaactgatgacaa |
15314422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 16 - 449
Target Start/End: Original strand, 15494358 - 15494791
Alignment:
| Q |
16 |
atcaatgtaatcaagttttgaagtttcaataatgtttcaggtatttgtccatggaaacgatttgcttgaagatttaaataagcaaggccacttatattga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15494358 |
atcaatgtaatcaagttttgaagtttcaataatgtttcaggtatttgtccatggaaacgatttgcttgaagatttaaataagcaaggccacttatattga |
15494457 |
T |
|
| Q |
116 |
acaaccaaataggcaagtcagagaagaaatcattttgagaaagatcaagatattcaagggaagtgaagttggcatatagaagagactgactagcactttt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15494458 |
acaaccaaataggcaagtcagagaagaaatcattttgagaaagatcaagatattcaagggaagtgaagttggcatatagaagagactgactagcactttt |
15494557 |
T |
|
| Q |
216 |
aagctgacacttatacaaatgtaactcagaaagtgaaggaaacatagtcaatatttgaagccaacgagtttccctatggagatcaatggagtccaggttg |
315 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15494558 |
aagctgacacctatacaaatgtaactcagaaagtgaaggaaacatagtcaatatttgaagccaacgagtttccctatggagatcaatggagtccaggttg |
15494657 |
T |
|
| Q |
316 |
agaaattgtaaggatgatgagagacgaagaagccatctcaaatcattaatcacaagattctcattttgagacaagtcaagatgaaaaacattggaaaagt |
415 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15494658 |
agaaattgtaaggatgacgagagacgaagaagccatctcaaatcattaatcacaagattctcattttgagacaagtcaagatgaaaaacattggaaaagt |
15494757 |
T |
|
| Q |
416 |
ttccactcccatgagaagtgttaactgatgacaa |
449 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
15494758 |
ttccactcccatgagaagtgttaactgatgacaa |
15494791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 55 - 448
Target Start/End: Original strand, 15284648 - 15285041
Alignment:
| Q |
55 |
ggtatttgtccatggaaacgatttgcttgaagatttaaataagcaaggccacttatattgaacaaccaaataggcaagtcagagaagaaatcattttgag |
154 |
Q |
| |
|
|||||||| |||||||||| |||| | |||||||||||||| ||| ||||||| |||||||||||| |||||||| ||| | || |||||||||| || |
|
|
| T |
15284648 |
ggtatttggccatggaaactatttcccccaagatttaaataagaaagaccacttagattgaacaaccatataggcaattcataaaataaatcattttcag |
15284747 |
T |
|
| Q |
155 |
aaagatcaagatattcaagggaagtgaagttggcatatagaagagactgactagcacttttaagctga-cacttatacaaatgtaactcagaaagtgaag |
253 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||| |||||||| ||| |||||| ||| ||| || || ||||| |||||| |||||||||| |
|
|
| T |
15284748 |
aaagatcaagatattcaagtgaagtgaaattggcatatggaagagacatactcacactttcaag-tgagcaactactcaaatataactcggaaagtgaag |
15284846 |
T |
|
| Q |
254 |
gaaacatagtcaatatttgaagccaacgagtttccctatggagatcaatggagtccaggttgagaaattgtaaggatgatgagagacgaagaagccatct |
353 |
Q |
| |
|
|||||||| |||||| ||||||||| | |||||| | ||||||| || ||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15284847 |
gaaacatattcaatagctgaagccaatgcgtttccttgtggagattaacggaattcaggttgagaaattgtaaggatgatgagagacgaagaagccatct |
15284946 |
T |
|
| Q |
354 |
caaatcattaatcacaagattctcattttgagacaagtcaagatgaaaaacattggaaaagtttccactcccatgagaagtgttaactgatgaca |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
15284947 |
caaatcattaatcacaagattctcattttgagacaagtcaagatgaaaaacattggaaaagtttccactcccataagaagtgttaactgatgaca |
15285041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 55 - 448
Target Start/End: Original strand, 15465017 - 15465410
Alignment:
| Q |
55 |
ggtatttgtccatggaaacgatttgcttgaagatttaaataagcaaggccacttatattgaacaaccaaataggcaagtcagagaagaaatcattttgag |
154 |
Q |
| |
|
|||||||| |||||||||| |||| | |||||||||||||| ||| ||||||| |||||||||||| |||||||| ||| | || |||||||||| || |
|
|
| T |
15465017 |
ggtatttggccatggaaactatttcccccaagatttaaataagaaagaccacttagattgaacaaccatataggcaattcataaaataaatcattttcag |
15465116 |
T |
|
| Q |
155 |
aaagatcaagatattcaagggaagtgaagttggcatatagaagagactgactagcacttttaagctga-cacttatacaaatgtaactcagaaagtgaag |
253 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||| |||||||| ||| |||||| ||| ||| || || ||||| |||||| |||||||||| |
|
|
| T |
15465117 |
aaagatcaagatattcaagtgaagtgaaattggcatatggaagagacatactcacactttcaag-tgagcaactactcaaatataactcggaaagtgaag |
15465215 |
T |
|
| Q |
254 |
gaaacatagtcaatatttgaagccaacgagtttccctatggagatcaatggagtccaggttgagaaattgtaaggatgatgagagacgaagaagccatct |
353 |
Q |
| |
|
|||||||| |||||| ||||||||| | |||||| | ||||||| || ||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15465216 |
gaaacatattcaatagctgaagccaatgcgtttccttgtggagattaacggaattcaggttgagaaattgtaaggatgatgagagacgaagaagccatct |
15465315 |
T |
|
| Q |
354 |
caaatcattaatcacaagattctcattttgagacaagtcaagatgaaaaacattggaaaagtttccactcccatgagaagtgttaactgatgaca |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
15465316 |
caaatcattaatcacaagattctcattttgagacaagtcaagatgaaaaacattggaaaagtttccactcccataagaagtgttaactgatgaca |
15465410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 55 - 448
Target Start/End: Original strand, 15303163 - 15303556
Alignment:
| Q |
55 |
ggtatttgtccatggaaacgatttgcttgaagatttaaataagcaaggccacttatattgaacaaccaaataggcaagtcagagaagaaatcattttgag |
154 |
Q |
| |
|
|||||||| |||| ||||| |||| | | |||||||||||||| ||||||||||| |||||||||||| |||||||| ||||| |||||||| ||| || |
|
|
| T |
15303163 |
ggtatttggccatagaaactattttccttaagatttaaataagaaaggccacttaaattgaacaaccatataggcaattcagaaaagaaatcgtttccag |
15303262 |
T |
|
| Q |
155 |
aaagatcaagatattcaagggaagtgaagttggcatatagaagagactgactagcacttttaagctga-cacttatacaaatgtaactcagaaagtgaag |
253 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||| |||||||| | || ||||| ||| ||| || || ||||| ||||||||||||||||| |
|
|
| T |
15303263 |
aaagatcaagatattcaagtgaagtgaaattggcatatggaagagacgggctcaaactttcaag-tgagcaactactcaaatataactcagaaagtgaag |
15303361 |
T |
|
| Q |
254 |
gaaacatagtcaatatttgaagccaacgagtttccctatggagatcaatggagtccaggttgagaaattgtaaggatgatgagagacgaagaagccatct |
353 |
Q |
| |
|
||| |||| ||||||| ||||||||| | |||||| | |||| || || | |||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
15303362 |
gaagcatattcaatatctgaagccaatgtgtttccttgtggatattaacataatccaggttgataaattgtaaggatgatgagagacgaagaagccatct |
15303461 |
T |
|
| Q |
354 |
caaatcattaatcacaagattctcattttgagacaagtcaagatgaaaaacattggaaaagtttccactcccatgagaagtgttaactgatgaca |
448 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15303462 |
caaatcattaatcacaagattctcattttgagacaagtcaagatgaaaaacattggaaaagtttccactcccatgagaagtgttaactgatgaca |
15303556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 55 - 448
Target Start/End: Original strand, 15483532 - 15483925
Alignment:
| Q |
55 |
ggtatttgtccatggaaacgatttgcttgaagatttaaataagcaaggccacttatattgaacaaccaaataggcaagtcagagaagaaatcattttgag |
154 |
Q |
| |
|
|||||||| |||| ||||| |||| | | |||||||||||||| ||||||||||| |||||||||||| |||||||| ||||| |||||||| ||| || |
|
|
| T |
15483532 |
ggtatttggccatagaaactattttccttaagatttaaataagaaaggccacttaaattgaacaaccatataggcaattcagaaaagaaatcgtttccag |
15483631 |
T |
|
| Q |
155 |
aaagatcaagatattcaagggaagtgaagttggcatatagaagagactgactagcacttttaagctga-cacttatacaaatgtaactcagaaagtgaag |
253 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||| |||||||| | || ||||| ||| ||| || || ||||| ||||||||||||||||| |
|
|
| T |
15483632 |
aaagatcaagatattcaagtgaagtgaaattggcatatggaagagacgggctcaaactttcaag-tgagcaactactcaaatataactcagaaagtgaag |
15483730 |
T |
|
| Q |
254 |
gaaacatagtcaatatttgaagccaacgagtttccctatggagatcaatggagtccaggttgagaaattgtaaggatgatgagagacgaagaagccatct |
353 |
Q |
| |
|
||| |||| ||||||| ||||||||| | |||||| | |||| || || | |||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
15483731 |
gaagcatattcaatatctgaagccaatgtgtttccttgtggatattaacataatccaggttgataaattgtaaggatgatgagagacgaagaagccatct |
15483830 |
T |
|
| Q |
354 |
caaatcattaatcacaagattctcattttgagacaagtcaagatgaaaaacattggaaaagtttccactcccatgagaagtgttaactgatgaca |
448 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15483831 |
caaatcattaatcacaagattctcattttgagacaagtcaagatgaaaaacattggaaaagtttccactcccatgagaagtgttaactgatgaca |
15483925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 52 - 441
Target Start/End: Original strand, 15446908 - 15447297
Alignment:
| Q |
52 |
tcaggtatttgtccatggaaacgatttgcttgaagatttaaataagcaaggccacttatattgaacaaccaaataggcaagtcagagaagaaatcatttt |
151 |
Q |
| |
|
||||||||||| ||||| || ||||| || ||||||| ||||||| ||||||||||| |||||||||||||| |||||| ||||||||||||| ||| | |
|
|
| T |
15446908 |
tcaggtatttggccatgaaactgattttctcgaagattcaaataagaaaggccacttagattgaacaaccaaagaggcaattcagagaagaaattattgt |
15447007 |
T |
|
| Q |
152 |
gagaaagatcaagatattcaagggaagtgaagttggcatatagaagagactgactagcacttttaagctgacacttatacaaatgtaactcagaaagtga |
251 |
Q |
| |
|
||||||||||||||||||||| || ||||| ||| ||||| ||||||| | |||||| ||| || || ||||||||||||||||||||| |
|
|
| T |
15447008 |
aagaaagatcaagatattcaagtgaggtgaaattgacatatgaaagagacgggtgcacactttcaagtaagcaactactcaaatgtaactcagaaagtga |
15447107 |
T |
|
| Q |
252 |
aggaaacatagtcaatatttgaagccaacgagtttccctatggagatcaatggagtccaggttgagaaattgtaaggatgatgagagacgaagaagccat |
351 |
Q |
| |
|
||||| |||| ||||||| ||||||||| | |||||| | |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15447108 |
aggaagcatattcaatatctgaagccaaagcgtttccttgtggagatcaacataatccaggttgagaaattgtaaggatgatgagagacgaagaagccat |
15447207 |
T |
|
| Q |
352 |
ctcaaatcattaatcacaagattctcattttgagacaagtcaagatgaaaaacattggaaaagtttccactcccatgagaagtgttaact |
441 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
15447208 |
ctcaaatcattaatcacaagattctcattttgagacaagtcaaggtgaacaacatttgaaaagtttccactcccataagaagtgttaact |
15447297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 27 - 419
Target Start/End: Original strand, 18052626 - 18053015
Alignment:
| Q |
27 |
caagttttgaagtttcaataatgtttcaggtatttgtccatggaaacgatttgcttgaagatttaaataagcaaggccacttatattgaacaaccaaata |
126 |
Q |
| |
|
||||||| |||| |||||||| ||||| |||||| ||||| ||||||||| || |||||| |||| | ||||||||||| |||||| |||||| || |
|
|
| T |
18052626 |
caagtttcgaagattcaataaagtttcgggtattaagccatgaaaacgattttctccaagattcaaatgataaaggccacttagattgaataaccaatta |
18052725 |
T |
|
| Q |
127 |
ggcaagtcagagaagaaatcattttgagaaagatcaagatattcaagggaagtgaagttggcatatagaagagactgactagcacttttaagctgacact |
226 |
Q |
| |
|
|| | ||||| ||||||||||| | ||||||||||||||||||||| || || || ||||||||| ||||||| || | || ||| ||| || |
|
|
| T |
18052726 |
ggtagttcagaaaagaaatcattgtcagaaagatcaagatattcaagtgatgtaaaattggcatattgaagagatggattcgcgttttcaagtaagcaac |
18052825 |
T |
|
| Q |
227 |
tatacaaatgtaactcagaaagtgaaggaaacatagtcaatatttgaagccaacgagtttccctatggagatcaatggagtccaggttgagaaattgtaa |
326 |
Q |
| |
|
|| |||||||||||||||||| ||||||| |||||| || |||||||||||| || |||| | | ||||||||| | || | ||||||| ||| || |
|
|
| T |
18052826 |
tactcaaatgtaactcagaaagcgaaggaagcatagttaacatttgaagccaatgattttctttgcgaagatcaatgaaatcaaagttgagatattcta- |
18052924 |
T |
|
| Q |
327 |
ggatgatgagagacgaagaagccatctcaaatcattaatcacaagattctcattttgagacaagtcaagatgaaaaacattggaaaagtttcc |
419 |
Q |
| |
|
||||||| || |||||||||||| ||||||||| ||||||||||||||||||| ||||| |||||||||| ||||| |||||||||||| |
|
|
| T |
18052925 |
--atgatgataggcgaagaagccatttcaaatcatcaatcacaagattctcatttcctgacaaatcaagatgaacaacatcggaaaagtttcc |
18053015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 197
Target Start/End: Original strand, 15298438 - 15298544
Alignment:
| Q |
91 |
aaataagcaaggccacttatattgaacaaccaaataggcaagtcagagaagaaatcattttgagaaagatcaagatattcaagggaagtgaagttggcat |
190 |
Q |
| |
|
||||||| ||| |||||| ||||||||||| |||||| | ||||| |||||||||||| ||||| |||||||| |||||| ||| | || ||||||| |
|
|
| T |
15298438 |
aaataagaaagaccactttgattgaacaaccgaatagggagttcagaaaagaaatcatttccagaaacatcaagatcttcaagcgaaataaaattggcat |
15298537 |
T |
|
| Q |
191 |
atagaag |
197 |
Q |
| |
|
|| |||| |
|
|
| T |
15298538 |
atggaag |
15298544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 197
Target Start/End: Original strand, 15478807 - 15478913
Alignment:
| Q |
91 |
aaataagcaaggccacttatattgaacaaccaaataggcaagtcagagaagaaatcattttgagaaagatcaagatattcaagggaagtgaagttggcat |
190 |
Q |
| |
|
||||||| ||| |||||| ||||||||||| |||||| | ||||| |||||||||||| ||||| |||||||| |||||| ||| | || ||||||| |
|
|
| T |
15478807 |
aaataagaaagaccactttgattgaacaaccgaatagggagttcagaaaagaaatcatttccagaaacatcaagatcttcaagcgaaataaaattggcat |
15478906 |
T |
|
| Q |
191 |
atagaag |
197 |
Q |
| |
|
|| |||| |
|
|
| T |
15478907 |
atggaag |
15478913 |
T |
|
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