View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20071_low_21 (Length: 448)
Name: NF20071_low_21
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20071_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Complemental strand, 35884104 - 35883689
Alignment:
| Q |
1 |
aaatacatataaatagatgtcattcattctaacagataagaataaacataacaaatagttgaatactgtcatgtatcaatacatcaaagcaggtaatcct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35884104 |
aaatacatataaatagatgtcattcattctaacagataagaataaacataacaaatagttgaatactgtcatgtatcaatacatcaaagcaggtaatcct |
35884005 |
T |
|
| Q |
101 |
gaattcttgtaaaaatgaatttcagttcctaactatttaaactcaaaatattaataaaatttgttaatataaggggaggtatggatggcgatgtgctcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || ||| | ||| |||||||||||| |||||||||||| |
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| T |
35884004 |
gaattcttgtaaaaatgaatttcagttcctaactatttaaactcaatat--------------ttagtc--aggtgaggtatggatgacgatgtgctcta |
35883921 |
T |
|
| Q |
201 |
aaagttaatagactaatagtcaataatatttagtcaggtgattattaataagtgcgaacaagggtaagcttacagtctcaagaagcagatattatcattt |
300 |
Q |
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| T |
35883920 |
agagttaatagactaatagtcaataatatttagtcaggtgattattaataagtgcgaacaagggtaagcttacagtctcaagaagcagatattatcattt |
35883821 |
T |
|
| Q |
301 |
gtgccagataaggaaaatactaatgcagacatgggactctagcaagaagttaatgaactgatagaattatcaaaagaatatattagaaatcaaatgtgtg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
35883820 |
gtgccagataaggaaaatactaatgcagacatgggactctagcaagaagttaatgtactgatagaattatcaaaaggatatattagaaatcaaatgtgtg |
35883721 |
T |
|
| Q |
401 |
cacttctttgtcagttctgcagagtattttcc |
432 |
Q |
| |
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| T |
35883720 |
cacttctttgtcagttctgcagagtattttcc |
35883689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 35884388 - 35884287
Alignment:
| Q |
7 |
atataaatagatgtcattcattctaacaga-taagaataaacataacaaatagttgaatactgtcatgtatcaatacatcaaagcaggtaatcctgaatt |
105 |
Q |
| |
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||||||||||||| |||||| |||||||| ||||||||||| |||||||| |||||||| || |||||||| ||||||||| ||||||| ||||| |
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| T |
35884388 |
atataaatagatgcaattcatactaacagattaagaataaac--aacaaatacttgaataccaccaagtatcaatgcatcaaagcgtgtaatcccgaatt |
35884291 |
T |
|
| Q |
106 |
cttg |
109 |
Q |
| |
|
|||| |
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|
| T |
35884290 |
cttg |
35884287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 359 - 432
Target Start/End: Original strand, 10210520 - 10210594
Alignment:
| Q |
359 |
tgatagaatta-tcaaaagaatatattagaaatcaaatgtgtgcacttctttgtcagttctgcagagtattttcc |
432 |
Q |
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| T |
10210520 |
tgatagaattaataaaaaggatatatcagaaatcaaatgtgtgcacttctttgtcaattctgcaaagtattttcc |
10210594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 10210117 - 10210220
Alignment:
| Q |
1 |
aaatacatataaatagatgtcattcattctaacagataagaataaacataacaaatagttgaatact-----gt--catgtatcaatacatcaaagcagg |
93 |
Q |
| |
|
||||||||||||||| | | || |||||||||||||||||||||| |||||||||||||| |||||| || |||||||||||||| ||||||||| |
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| T |
10210117 |
aaatacatataaatacaggccagtcattctaacagataagaataaccataacaaatagttaaatactaccaagtaccatgtatcaatacaacaaagcagg |
10210216 |
T |
|
| Q |
94 |
taat |
97 |
Q |
| |
|
|||| |
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|
| T |
10210217 |
taat |
10210220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 361
Target Start/End: Original strand, 10210231 - 10210366
Alignment:
| Q |
218 |
agtcaataatatttagtcaggtgattattaataagtgcgaacaagggtaagcttacagtctcaagaagcagatattatcatttgtgccagataaggaaaa |
317 |
Q |
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|||||| |||||||||||| || |||||||||||| | ||||||| || |||||||||||| ||| ||||||| |||| ||||||| |||| |
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| T |
10210231 |
agtcaacaatatttagtcaagtaattattaataagcac-aacaaggttagctttacagtctcaaaaagaagatatt-------gtgcaagataagaaaaa |
10210322 |
T |
|
| Q |
318 |
tactaatgcagacatgggactctagcaagaagttaatgaactga |
361 |
Q |
| |
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| |||||||||||| ||| |||||||| ||||||||||||||| |
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| T |
10210323 |
tgttaatgcagacattggaatctagcaacaagttaatgaactga |
10210366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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