View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20071_low_25 (Length: 422)
Name: NF20071_low_25
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20071_low_25 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 128 - 422
Target Start/End: Original strand, 37592069 - 37592376
Alignment:
| Q |
128 |
tactggcttacctctgccaaagaaagattaagatccttcctgatagcatcttgagttggagatgaaaatccagtctagagaaacaaaaat---------t |
218 |
Q |
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| T |
37592069 |
tactggcttacctcttccaaagacagattaagatccctcctgatagcatcttgagctggagatgaatacccagtctggaaaaacaaaaataacaaaaatt |
37592168 |
T |
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| Q |
219 |
caataaaactcttgaaattgtatagaataattgctgatttacagagaa----gtaaagagttatacaagcaccaaattcataagaaccacaaactgcaat |
314 |
Q |
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| T |
37592169 |
atataaaactcttgaaattgtataaaataattgctgatttacagagaaagaagtgaagacttacacaagcaccaaattcataagaaccacaaactgcaat |
37592268 |
T |
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| Q |
315 |
gaatgtggtgaaataaggcatccatggatgatgatgttctttgtttgcatggacaagttggttgtggtgttcccctatcaatggttctctcattcctttc |
414 |
Q |
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| T |
37592269 |
gaatgtggtgaaataaagcatccatggataatgatgatctttgtttgcatggacaagttggttgttgtgttcccctatcaatggttctctcattcctttc |
37592368 |
T |
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| Q |
415 |
tgcttacc |
422 |
Q |
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| T |
37592369 |
tgcttacc |
37592376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 248 - 416
Target Start/End: Complemental strand, 37462087 - 37461919
Alignment:
| Q |
248 |
attgctgatttacagagaagtaaagagttatacaagcaccaaattcataagaaccacaaactgcaatgaatgtggtgaaataaggcatccatggatgatg |
347 |
Q |
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| T |
37462087 |
attgctgatttacagagaagtaaagacttacacaagcaccaaattcataagaaccacaaactgcaatgaatgtggtgaagtaaaccatccatggatgatg |
37461988 |
T |
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| Q |
348 |
atgttctttgtttgcatggacaagttggttgtggtgttcccctatcaatggttctctcattcctttctg |
416 |
Q |
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| T |
37461987 |
atgatctttgtttgcatggacaagttggttgttttgttcacctatcaatggttctcttattcctttctg |
37461919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 37462286 - 37462214
Alignment:
| Q |
128 |
tactggcttacctctgccaaagaaagattaagatccttcctgatagcatcttgagttggagatgaaaatccag |
200 |
Q |
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| T |
37462286 |
tactggcttacctctgccaaagacagactaagatccttcctaatagcttcttgagttggagatgaatatccag |
37462214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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