View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20071_low_27 (Length: 416)
Name: NF20071_low_27
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20071_low_27 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 5669964 - 5669549
Alignment:
| Q |
1 |
gtagatctacttggtaggtcaggccaagtaaatgaagctttagagcttattgaaagcatgccttttgaagctgatgatgttatatggagaactttactcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5669964 |
gtagatctacttggtaggtcaggccaagtaaatgaagctttagagcttattgaaagcatgccttttgaagctgatgatgttatatggagaactttactcg |
5669865 |
T |
|
| Q |
101 |
gtatttgcaagttgcaagggaacgttgaggttgcagaaaaagcagccaattctttattgcagttggaccctcaagattcttctgcttacgttcttttgtc |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5669864 |
gtatttgcaggttgcaagggaacgttgaggttgcagaaaaagcagctaattctttattgcagttggaccctcaagattcttctgcttacgtacttttgtc |
5669765 |
T |
|
| Q |
201 |
gaatgtatatgctatcgcaggaatgtggggcgaggttgcgaaaatacgaagttttatgaagaattataagttaaagaaggagccgggatgtagctggatt |
300 |
Q |
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| T |
5669764 |
gaatgtatatgctatcgcaggaatgtggggcgaggttgcgaaaatacgaagttttatgaagaattataagttaaagaaggagccgggatgtagctggatt |
5669665 |
T |
|
| Q |
301 |
caggtaagggacgaggtacatgcgtttcttgttggagacaaggcacatccgagatctgaggagatataccagcaaactcatttgcttgtggatgagatga |
400 |
Q |
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| T |
5669664 |
caggtaagggacgaggtacatgcgtttcttgttggagacaaggcacatccgagatctgaggagatataccaacaaactcatttgcttgtggatgagatga |
5669565 |
T |
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| Q |
401 |
agtgggacggatatgt |
416 |
Q |
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| T |
5669564 |
agtgggacggatatgt |
5669549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 5695016 - 5694601
Alignment:
| Q |
1 |
gtagatctacttggtaggtcaggccaagtaaatgaagctttagagcttattgaaagcatgccttttgaagctgatgatgttatatggagaactttactcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5695016 |
gtagatctacttggtaggtcaggccaagtaaatgaagctttagagcttattgaaagcatgccttttgaagctgatgatgttatatggagaactttactcg |
5694917 |
T |
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| Q |
101 |
gtatttgcaagttgcaagggaacgttgaggttgcagaaaaagcagccaattctttattgcagttggaccctcaagattcttctgcttacgttcttttgtc |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5694916 |
gtatttgcaggttgcaagggaacgttgaggttgcagaaaaagcagctaattctttattgcagttggaccctcaagattcttctgcttacgtacttttgtc |
5694817 |
T |
|
| Q |
201 |
gaatgtatatgctatcgcaggaatgtggggcgaggttgcgaaaatacgaagttttatgaagaattataagttaaagaaggagccgggatgtagctggatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5694816 |
gaatgtatatgctatcgcaggaatgtggggcgaggttgcgaaaatacgaagttttatgaagaattataagttaaagaaggagccgggatgtagctggatt |
5694717 |
T |
|
| Q |
301 |
caggtaagggacgaggtacatgcgtttcttgttggagacaaggcacatccgagatctgaggagatataccagcaaactcatttgcttgtggatgagatga |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5694716 |
caggtaagggacgaggtacatgcgtttcttgttggagacaaggcacatccgagatctgaggagatataccaacaaactcatttgcttgtggatgagatga |
5694617 |
T |
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| Q |
401 |
agtgggacggatatgt |
416 |
Q |
| |
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|||||||||||||||| |
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| T |
5694616 |
agtgggacggatatgt |
5694601 |
T |
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