View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20071_low_28 (Length: 410)
Name: NF20071_low_28
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20071_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 379
Target Start/End: Original strand, 42968386 - 42968746
Alignment:
| Q |
18 |
ccacccaacccaagcatggatgattgagcatatctgctaataaagctgttcttttctgtcatgcaaccatctccaactgttgaaaaaagcacataacagt |
117 |
Q |
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| T |
42968386 |
ccacccaacccaagcatggatggttgagcatatctgctaataaagctgttctttcctgtcatgcaaccatctccaactgttgaaaaaagcacataacaat |
42968485 |
T |
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| Q |
118 |
cagtcatattgagcatcttgtgtatgatttatttttaccatttcttggttcttgtataaagttccctccaaatcccaattccatgtggcaaaagtaaagg |
217 |
Q |
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| T |
42968486 |
cagtcatattgagcatcttgtgtatgatttatttttaccatttcttggttcttgtataaagttccctccaaatcccaattccatgtggcaaaagtaaagg |
42968585 |
T |
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| Q |
218 |
taatacccaatttagatcatttcaaatannnnnnngccattttgnnnnnnnnnngttatactttggccaataaatattcagcctaataagtttattttct |
317 |
Q |
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| T |
42968586 |
taatacccaatttagatcatttcaaatatttttttgccattttg-aaaaaaaaagttatactttggccaataaatattcagcctaataagtttattttct |
42968684 |
T |
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| Q |
318 |
taattaatattaaaaattgacaatgaagctcaacttagttggtaagacgcttcacctacacc |
379 |
Q |
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| T |
42968685 |
taattaatattaaaaattgacaatgaagctcaacttagttggtaagacgcttcacctacacc |
42968746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 334 - 373
Target Start/End: Complemental strand, 36815843 - 36815804
Alignment:
| Q |
334 |
ttgacaatgaagctcaacttagttggtaagacgcttcacc |
373 |
Q |
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| T |
36815843 |
ttgacaatgaagtgcaacttagttggtaagacgcttcacc |
36815804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 379
Target Start/End: Original strand, 12260602 - 12260630
Alignment:
| Q |
351 |
cttagttggtaagacgcttcacctacacc |
379 |
Q |
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| T |
12260602 |
cttagttggtaagacgcttcacctacacc |
12260630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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