View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20071_low_3 (Length: 773)
Name: NF20071_low_3
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20071_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 669; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 669; E-Value: 0
Query Start/End: Original strand, 30 - 758
Target Start/End: Complemental strand, 24876791 - 24876063
Alignment:
| Q |
30 |
ctatcattacttcctcgtttacaggcattgaattttcatcatttccgtcaattgatttccctctctgaggaagattactaagcttaatctgttcacaaag |
129 |
Q |
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| T |
24876791 |
ctatcattacttcctcgttcacaggcattgaattttcatcatttccgtcaattgatttccctctctgaggaagattactaagcttaatctgttcacaaag |
24876692 |
T |
|
| Q |
130 |
ttgagaatcctttgcctgtgtctgcatggattgcttcaaagctttcttcagctcttcacagtaattctccaagtactccatcttctgtctcaactctccc |
229 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24876691 |
ttgagaatcccttgcctgtgtctgcatggattgcttcaaagctttcttcagctcttcacagtaattctccaagtactccatcttctgtctcaactctccc |
24876592 |
T |
|
| Q |
230 |
aatgaacatctcatctcagaaacttccatcaacgccacatctctattctcattcgcttctatcaactctttcttcaatgcctcaattgacattattccta |
329 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24876591 |
aatgaacatcgcatctcagaaacttccatcaacgccacatctctattctcgttcgcttctatcaactctttcttcaatgcctcaattgacattattccta |
24876492 |
T |
|
| Q |
330 |
tgtccttgagaacctgagaaacatcctcagattctgctctattaggagaattctcattcttatgcttcttctttaaccgaggaaacaaccacaaaatcac |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24876491 |
tgtccttgagaacctgagaaacatcctcagattctgctctattaggagaattctcattcttatgcttcttctttaaccgaggaaacaaccacgaaatcac |
24876392 |
T |
|
| Q |
430 |
ccctttgctttttgattcagactgaaacgacgagagggcatctgcggcagggacaacaatattggagctcttgctgttccttgcactctccagttaaata |
529 |
Q |
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|||||||||||||| ||||||||||||||||||| ||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
24876391 |
ccctttgctttttgtttcagactgaaacgacgagtgggaatctgtggcaggaacaacaatattggagctcttgctgttccttgcactctccagttcacta |
24876292 |
T |
|
| Q |
530 |
gttataattgcaaggttacatttattgcaggagggtactgatttagaatcctctaaactgtttcttctcttacacctgtagctttcattcgtaggcgatg |
629 |
Q |
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|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
24876291 |
gttataattgcagggttacatttattgcaggaggatactgatttagaatcctctaaactgtttcttctcttacacctgtagctttcgttcgtaggcgatg |
24876192 |
T |
|
| Q |
630 |
tttgaagaacagttatatgatttgcacaagaaccggttacggatttggtgtcatcaacaggacatatgtgagattctaggttggtaaaaccacaaggtag |
729 |
Q |
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| T |
24876191 |
tttgaagaacagttatatgatttgcacaagaaccggttacggatttggtgtcatcaacaggacatatgtgagattctaggttggtaaaaccacaaggtag |
24876092 |
T |
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| Q |
730 |
tagtaccccttttcttgaacttggtttat |
758 |
Q |
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| T |
24876091 |
tagtaccccttttcttgaacttggtttat |
24876063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 164 - 255
Target Start/End: Complemental strand, 42073697 - 42073606
Alignment:
| Q |
164 |
ttcaaagctttcttcagctcttcacagtaattctccaagtactccatcttctgtctcaactctcccaatgaacatctcatctcagaaacttc |
255 |
Q |
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||||| |||||||||| ||||||||||||| ||||| ||||| | ||| ||| ||| ||| || |||||| ||||||||||||||||||| |
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| T |
42073697 |
ttcaacgctttcttcaactcttcacagtaaccttccaaatactcaagcttttgtttcagctcaccaaatgaagatctcatctcagaaacttc |
42073606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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