View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20071_low_32 (Length: 384)
Name: NF20071_low_32
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20071_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 13 - 366
Target Start/End: Original strand, 29071823 - 29072178
Alignment:
| Q |
13 |
aatatgaaatagacccttgaaaaatctcttactaagagaccctcaccagatgtgtttttactagtacttgtactacggacagcacacaaagtcttgccct |
112 |
Q |
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| T |
29071823 |
aatatgaaatagacccttgaaaaatctcttactaagagaccctcaccagatgtgtttttactagtacttgtactacggacagcacacaaagtcttgccct |
29071922 |
T |
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| Q |
113 |
caccattaatggaggttaccatcaaatccttaacgtcttattcttttgttgctaagcatatgtttacataccgggacattctaaacaggtctctaaaaag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29071923 |
caccattaatggaggttaccatcaaatccttaacgtcttattcttttgttgctaagcatatgtttacataccgggacattctaaacaggtctctaaaaag |
29072022 |
T |
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| Q |
213 |
tttcatagatagacccttatcactcttagtaga--atgaatggtgaactattaaccgtgcaaggttaaaaatgttgggagtgtttgtttcaccaacttct |
310 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29072023 |
tttcatagatagacccttatcactcttagtagaatatgaatggtgaactattaaccgtgcaaggttaaaaatgttgggagtgtttgtttcaccgacttct |
29072122 |
T |
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| Q |
311 |
tacttttttgattcaaacaaaccaaatgaaactcgttaaaatggttcccccataat |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29072123 |
tacttttttgattcaaacaaaccaaatgaaactcgttaaaatggttcccccataat |
29072178 |
T |
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