View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20071_low_36 (Length: 373)

Name: NF20071_low_36
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20071_low_36
NF20071_low_36
[»] chr1 (7 HSPs)
chr1 (23-276)||(2609298-2609549)
chr1 (291-373)||(34307138-34307220)
chr1 (292-371)||(39249864-39249943)
chr1 (291-373)||(2509133-2509215)
chr1 (291-373)||(46901735-46901817)
chr1 (292-373)||(19258674-19258754)
chr1 (291-373)||(28647462-28647543)
[»] chr7 (20 HSPs)
chr7 (291-373)||(36346565-36346647)
chr7 (291-373)||(26972203-26972285)
chr7 (291-373)||(7699883-7699965)
chr7 (291-373)||(7700081-7700163)
chr7 (291-373)||(7700279-7700361)
chr7 (291-373)||(7700477-7700559)
chr7 (291-373)||(28307495-28307577)
chr7 (291-373)||(45782660-45782742)
chr7 (285-373)||(5811158-5811245)
chr7 (291-373)||(13108256-13108337)
chr7 (291-373)||(34108535-34108617)
chr7 (291-373)||(34828174-34828255)
chr7 (291-373)||(29953572-29953654)
chr7 (291-373)||(46475133-46475215)
chr7 (291-373)||(31148399-31148480)
chr7 (291-373)||(42220964-42221045)
chr7 (291-366)||(42950037-42950111)
chr7 (292-373)||(30887809-30887890)
chr7 (291-371)||(36957540-36957618)
chr7 (292-371)||(21807324-21807402)
[»] chr2 (11 HSPs)
chr2 (291-373)||(44958222-44958304)
chr2 (286-373)||(16089930-16090016)
chr2 (291-373)||(37498863-37498945)
chr2 (293-373)||(3830900-3830979)
chr2 (291-373)||(33732678-33732759)
chr2 (312-373)||(14573104-14573165)
chr2 (286-373)||(6376234-6376320)
chr2 (292-373)||(13535753-13535834)
chr2 (291-373)||(36315670-36315752)
chr2 (291-338)||(37914237-37914285)
chr2 (291-373)||(41188878-41188960)
[»] chr8 (12 HSPs)
chr8 (286-373)||(12665454-12665541)
chr8 (291-373)||(10203773-10203855)
chr8 (291-373)||(18184662-18184743)
chr8 (291-373)||(42162707-42162789)
chr8 (285-373)||(36189325-36189411)
chr8 (298-371)||(44081891-44081964)
chr8 (291-373)||(33726121-33726202)
chr8 (291-373)||(30432448-30432529)
chr8 (291-373)||(31318914-31318996)
chr8 (227-280)||(44383249-44383303)
chr8 (286-373)||(43186136-43186222)
chr8 (291-366)||(38845023-38845098)
[»] chr4 (10 HSPs)
chr4 (291-373)||(7217874-7217956)
chr4 (291-373)||(21390956-21391037)
chr4 (291-373)||(44275815-44275896)
chr4 (291-373)||(3672383-3672465)
chr4 (291-373)||(28093096-28093178)
chr4 (292-373)||(35545021-35545102)
chr4 (291-373)||(49243924-49244005)
chr4 (291-373)||(6112739-6112820)
chr4 (291-373)||(46192468-46192550)
chr4 (291-366)||(52191201-52191275)
[»] chr3 (16 HSPs)
chr3 (291-373)||(21559670-21559752)
chr3 (291-373)||(51339784-51339865)
chr3 (291-373)||(29472918-29472999)
chr3 (291-373)||(46111944-46112026)
chr3 (292-373)||(36749515-36749596)
chr3 (290-373)||(22894789-22894871)
chr3 (291-373)||(30735496-30735578)
chr3 (291-373)||(36370338-36370420)
chr3 (291-373)||(44000098-44000180)
chr3 (291-373)||(48200794-48200876)
chr3 (291-373)||(34749898-34749980)
chr3 (291-366)||(39467102-39467176)
chr3 (291-371)||(38231403-38231483)
chr3 (291-333)||(50966267-50966309)
chr3 (291-333)||(51069402-51069444)
chr3 (291-363)||(39072279-39072350)
[»] chr5 (13 HSPs)
chr5 (291-373)||(13347237-13347319)
chr5 (291-373)||(39371036-39371118)
chr5 (291-373)||(40887942-40888024)
chr5 (291-373)||(2237385-2237467)
chr5 (291-373)||(31800667-31800748)
chr5 (291-373)||(42683708-42683790)
chr5 (293-373)||(27553376-27553455)
chr5 (291-373)||(14831653-14831735)
chr5 (306-373)||(9408054-9408121)
chr5 (291-373)||(1815620-1815698)
chr5 (291-373)||(4300544-4300625)
chr5 (304-373)||(12164363-12164432)
chr5 (291-371)||(19596068-19596148)
[»] chr6 (6 HSPs)
chr6 (291-373)||(3118047-3118129)
chr6 (289-373)||(14023043-14023126)
chr6 (291-373)||(24208553-24208634)
chr6 (291-373)||(3986906-3986987)
chr6 (291-366)||(15345660-15345734)
chr6 (291-373)||(13697677-13697758)
[»] scaffold0043 (1 HSPs)
scaffold0043 (291-368)||(87163-87239)
[»] scaffold0062 (1 HSPs)
scaffold0062 (291-373)||(6827-6909)


Alignment Details
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 23 - 276
Target Start/End: Complemental strand, 2609549 - 2609298
Alignment:
Q  23 atccgtacaagaaaatttaatagagacgaaaagattccacatttttatggatacggaaaacaaaatttcttatataacacttttccccccaaattaaaac 122  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  2609549 atccgtacaagaaaatttaatagagacgaaaacatgccacatttttatggatacggaaaacaaaatttct--tataacacttttccccccaaattaaaac 2609452  T
Q  123 aaatataaaactttttatgagacggttaat---taatattttagtgatgacattttagatgtcaagtaattnnnnnnnnntcttatgtatgtttttggat 219  Q
    ||||||||||||||||| ||||||||||||   |||||||||| |||||||||||||||||||||||||||         |||||||||| ||||| |||    
T  2609451 aaatataaaactttttacgagacggttaattaataatattttaatgatgacattttagatgtcaagtaatt-aaaaaaaatcttatgtatattttt-gat 2609354  T
Q  220 tcctctaaaaaatttctttcaaactttagtcctctaaatattttagtaccaatttta 276  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2609353 tcctct-aaaaatttctttcaaactttagtcctctaaatattttagtaccaatttta 2609298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 291 - 373
Target Start/End: Original strand, 34307138 - 34307220
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||||||||||||| |||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||    
T  34307138 gaaaaagataggtagacaccttttttcatacacctcttatgtacactcccatgtgttaggggtattttagtaattttacatca 34307220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 292 - 371
Target Start/End: Original strand, 39249864 - 39249943
Alignment:
Q  292 aaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacat 371  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||    
T  39249864 aaaaagataggtagacaccttttttcatacacctcttatgtacacccccatgtattaggggtattttagtaattttacat 39249943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 2509215 - 2509133
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||||||||||||  |||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||    
T  2509215 gaaaaagataggtagacactttttttcatacacctcttatgtacaccctcatgtattagggatattttagtaattttacatca 2509133  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 291 - 373
Target Start/End: Original strand, 46901735 - 46901817
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||||||||||| |||||||||||||  ||||||||| |||  ||||| | ||| |||||| |||||||||||||||    
T  46901735 gaaaaagataggtagacatcctttttcatacatttcttatgtacaccgccatgtatcaggagtatttgagtaattttacatca 46901817  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 292 - 373
Target Start/End: Original strand, 19258674 - 19258754
Alignment:
Q  292 aaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    ||||||||||||||||||||||||| ||||| |||| ||||| |||| |||||||||||  ||||||| |||||| ||||||    
T  19258674 aaaaagataggtagacacccttttttatacatctctcatgtacaccc-catgtgttaggaatattttaataatttcacatca 19258754  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 28647543 - 28647462
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||||||||||||||||||| ||||| |||| ||||| | || |||||||||||  ||||||| |||||| ||||||    
T  28647543 gaaaaagataggtagacacccttttttatacatctctcatgtacatcc-catgtgttaggaatattttaataatttcacatca 28647462  T

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Target: chr7 (Bit Score: 79; Significance: 7e-37; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 291 - 373
Target Start/End: Original strand, 36346565 - 36346647
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  36346565 gaaaaagataggtagacaccctttttcatacacctcttatgtacaccctcatgtgttaggggtattttagtaattttacatca 36346647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 291 - 373
Target Start/End: Original strand, 26972203 - 26972285
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||| ||||| |||||||||||| |||||||||||||||    
T  26972203 gaaaaagataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatca 26972285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 291 - 373
Target Start/End: Original strand, 7699883 - 7699965
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||||||| ||||||||||||||||||||||||| || ||| |||||||||| ||||||||||||||||||| ||||    
T  7699883 gaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatca 7699965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 291 - 373
Target Start/End: Original strand, 7700081 - 7700163
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||||||| ||||||||||||||||||||||||| || ||| |||||||||| ||||||||||||||||||| ||||    
T  7700081 gaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatca 7700163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 291 - 373
Target Start/End: Original strand, 7700279 - 7700361
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||||||| ||||||||||||||||||||||||| || ||| |||||||||| ||||||||||||||||||| ||||    
T  7700279 gaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatca 7700361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 291 - 373
Target Start/End: Original strand, 7700477 - 7700559
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||||||| ||||||||||||||||||||||||| || ||| |||||||||| ||||||||||||||||||| ||||    
T  7700477 gaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatca 7700559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 291 - 373
Target Start/End: Original strand, 28307495 - 28307577
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||||||||||| | |||||||||||||||||||||| |||| ||| ||||| ||||||||||||||||||||||||    
T  28307495 gaaaaagataggtagacatcttttttcatacacctcttatgtacacccccatatgttaagggtattttagtaattttacatca 28307577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 291 - 373
Target Start/End: Original strand, 45782660 - 45782742
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||||||||||||||||||| |||||| | ||||||| || | ||||||||||||||||||||||||||||||||||    
T  45782660 gaaaaagataggtagacacccttttttatacactttttatgtacactcccatgtgttaggggtattttagtaattttacatca 45782742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 285 - 373
Target Start/End: Original strand, 5811158 - 5811245
Alignment:
Q  285 ttttaagaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    ||||| |||||||||||||||||||||||||| |||||||||  ||||| | |||||||||||||||||||||||||||||| ||||||    
T  5811158 ttttaggaaaaagataggtagacacccttttttatacacctcccatgtaca-cctcatgtgttaggggtattttagtaatttcacatca 5811245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 13108337 - 13108256
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||||||||||||||||||| |||||||| | ||||| ||| |||||||||||||||||||||||||||| ||||||    
T  13108337 gaaaaagataggtagacacccttttttatacacctttcatgtacacc-tcatgtgttaggggtattttagtaatttcacatca 13108256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 34108617 - 34108535
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||||||| |||||||||||||||||| ||||||||| || | ||||| |||||||||||| |||||||||||||||    
T  34108617 gaaaaagataggtaaacaccctttttcatacacttcttatgtacactcccatgtattaggggtatttgagtaattttacatca 34108535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 34828255 - 34828174
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||||||||||| ||||||||||||||| |||||| | |||| ||| ||||||||||||||||||||||||||||||    
T  34828255 gaaaaagataggtagacatcctttttcatacaccacttatgcacaccc-catatgttaggggtattttagtaattttacatca 34828174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 291 - 373
Target Start/End: Original strand, 29953572 - 29953654
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||   ||||| |||||| ||||| |||||||||||||||    
T  29953572 gaaaaagataggtagacaccctttttcatacacttcttatgtagacttccatgtattagggatatttgagtaattttacatca 29953654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 46475215 - 46475133
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgtta-ggggtattttagtaattttacatca 373  Q
    |||||||||||||||||||||||||| |||||||||| ||||| |  ||||||||||| |||||||||||||||||| ||||||    
T  46475215 gaaaaagataggtagacacccttttttatacacctctcatgtaca-tctcatgtgttatggggtattttagtaatttcacatca 46475133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 31148480 - 31148399
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    ||||||||||||||||||| ||||||||||||||||||||  | |||| ||| |||||||  |||||||||||||||||||||    
T  31148480 gaaaaagataggtagacactctttttcatacacctcttatacacaccc-catatgttaggcttattttagtaattttacatca 31148399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 291 - 373
Target Start/End: Original strand, 42220964 - 42221045
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggta-ttttagtaattttacatca 373  Q
    |||||||||||||||||| ||||||||||||||| |||||||| || | ||||||||||||||| |||||||||||| ||||||    
T  42220964 gaaaaagataggtagaca-cctttttcatacaccacttatgtacactc-catgtgttaggggtatttttagtaatttaacatca 42221045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 366
Target Start/End: Original strand, 42950037 - 42950111
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattt 366  Q
    |||||||||||||||||||||||||| ||||||||   ||||| |||| ||||| | |||||||||||||||||||    
T  42950037 gaaaaagataggtagacacccttttttatacacctagcatgtacaccc-catgtttcaggggtattttagtaattt 42950111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 292 - 373
Target Start/End: Complemental strand, 30887890 - 30887809
Alignment:
Q  292 aaaaagataggta-gacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    ||||||||| ||| ||||||||||||||||||| |||||| || |||| ||||| |||| ||||||| |||||||||||||||    
T  30887890 aaaaagatacgtaagacaccctttttcatacacttcttatatacaccc-catgtattagaggtatttaagtaattttacatca 30887809  T

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Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 371
Target Start/End: Complemental strand, 36957618 - 36957540
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacat 371  Q
    |||||||||||||||||||  ||||| |||||||| | || || ||||  ||||||| |||||||||||||||||||||||    
T  36957618 gaaaaagataggtagacacaattttttatacacctttcatatacaccc--atgtgttgggggtattttagtaattttacat 36957540  T

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Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 292 - 371
Target Start/End: Original strand, 21807324 - 21807402
Alignment:
Q  292 aaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacat 371  Q
    |||||||||||| |||| ||||||| |||||| ||| || || |||| || |||||||||||||||||||||||| ||||    
T  21807324 aaaaagataggttgacaaccttttttatacacttctcatatacaccc-cacgtgttaggggtattttagtaatttcacat 21807402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 44958304 - 44958222
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44958304 gaaaaagataggtagacatcctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 44958222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 286 - 373
Target Start/End: Complemental strand, 16090016 - 16089930
Alignment:
Q  286 tttaagaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  16090016 tttaggaaaaagataggtagacaccttttttcatacacctcttatgtacaccc-catgtgttaggggtattttagtaattttacatca 16089930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 291 - 373
Target Start/End: Original strand, 37498863 - 37498945
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||||||||||||||||||| |||||||||||||||| | || ||||||||||||||||||||||||||||||||||    
T  37498863 gaaaaagataggtagacacccttttttatacacctcttatgtacatccccatgtgttaggggtattttagtaattttacatca 37498945  T

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Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 293 - 373
Target Start/End: Original strand, 3830900 - 3830979
Alignment:
Q  293 aaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||    
T  3830900 aaaagataggtagacaccctttttcatacacctcttatgtacaccc-catgtgttaggggtatattagtaattttacatca 3830979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 33732759 - 33732678
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| ||| | ||||||||||||||||||||||||||||    
T  33732759 gaaaaagataggtagacaccctttttcatacacctcttatgtacaccc-catatattaggggtattttagtaattttacatca 33732678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 312 - 373
Target Start/End: Complemental strand, 14573165 - 14573104
Alignment:
Q  312 tttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  14573165 ttttacatacacctcttatgtacacccccatgtgttaggggtattttagtaattttacatca 14573104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 286 - 373
Target Start/End: Original strand, 6376234 - 6376320
Alignment:
Q  286 tttaagaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||| |||||||||||||||||| ||||||| |||||||||  ||||| |  |||||||||||| |||||||||||||||| ||||||    
T  6376234 tttaggaaaaagataggtagacatccttttttatacacctcccatgtaca-tctcatgtgttagaggtattttagtaatttcacatca 6376320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 292 - 373
Target Start/End: Complemental strand, 13535834 - 13535753
Alignment:
Q  292 aaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||| |||||| ||||||| ||  |||||| |||||||||| ||||||  ||||||||||||||||||| ||||||    
T  13535834 aaaaagatagatagacatccttttttatgtacctctcatgtatacccccatgtgacaggggtattttagtaatttcacatca 13535753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 36315752 - 36315670
Alignment:
Q  291 gaaaaagataggtagaca-ccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||||||||||| || ||||| |||||||||||||||| | |||||||||| |||||||||||| | |||| ||||||    
T  36315752 gaaaaagataggtagacatccttttttgatacacctcttatgtaca-cctcatgtgtcaggggtattttaatcatttcacatca 36315670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 338
Target Start/End: Original strand, 37914237 - 37914285
Alignment:
Q  291 gaaaaagataggtagacaccc-tttttcatacacctcttatgtataccc 338  Q
    ||||||||||||||||||||| ||||| |||||||||||||||| ||||    
T  37914237 gaaaaagataggtagacacccttttttgatacacctcttatgtacaccc 37914285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 41188960 - 41188878
Alignment:
Q  291 gaaaaagataggtagacaccctttt-tcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||||| |||||||||||| | |||||||||| ||||| | |  ||||||| || | |||||||||||||||||||||    
T  41188960 gaaaaagataggcagacacccttttgttatacacctctcatgtacatca-catgtgtcagagatattttagtaattttacatca 41188878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 5e-35; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 286 - 373
Target Start/End: Complemental strand, 12665541 - 12665454
Alignment:
Q  286 tttaagaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12665541 tttaggaaaaagataggtagacatcctttttcgtacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 12665454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 10203855 - 10203773
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||| |||||||||||||||| ||||    
T  10203855 gaaaaagataggtagacaccctttttcatacatctcttatgtacaccctcatgtattagggatattttagtaattttatatca 10203773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 18184743 - 18184662
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||||||||||| |||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||| ||||    
T  18184743 gaaaaagataggtagacatcctttttcatacaccttttatgtaca-cctcatgtgttaggggtattttagtaattttatatca 18184662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 42162789 - 42162707
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    ||||||||||||||||||| ||||||||||||| | ||||||| |||| ||||| |||||||||||| |||||||||||||||    
T  42162789 gaaaaagataggtagacactctttttcatacactttttatgtacacccccatgtattaggggtatttgagtaattttacatca 42162707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 285 - 373
Target Start/End: Complemental strand, 36189411 - 36189325
Alignment:
Q  285 ttttaagaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||| |||  ||| |||||||||||||||| |||||||| ||||    
T  36189411 ttttaggaaaaagataggtagacaccctttttcatacaccacttatgtacacc--catatgttaggggtattttaataattttatatca 36189325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 298 - 371
Target Start/End: Complemental strand, 44081964 - 44081891
Alignment:
Q  298 ataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacat 371  Q
    |||||||||||||||||||||||||| ||||||||| |||| ||||| |||||||||||| |||||||||||||    
T  44081964 ataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacat 44081891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 33726202 - 33726121
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||||||||||||||||||| |||||||||  ||||| | | |||||||||||||||||||||||||||| ||||||    
T  33726202 gaaaaagataggtagacacccttttttatacacctcccatgtaca-cttcatgtgttaggggtattttagtaatttcacatca 33726121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 30432529 - 30432448
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    ||||||||| | ||||||||||||||||||||||||||||||| | || ||| | ||| ||||||||||||||||||||||||    
T  30432529 gaaaaagattgatagacaccctttttcatacacctcttatgtacatcc-catatattatgggtattttagtaattttacatca 30432448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 31318996 - 31318914
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||||||||||| | |||||||||||| |||||| || |||| ||||| ||||| |||||| |||||||||||||||    
T  31318996 gaaaaagataggtagacatcatttttcatacacttcttatatacacccccatgtattaggagtatttgagtaattttacatca 31318914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 227 - 280
Target Start/End: Complemental strand, 44383303 - 44383249
Alignment:
Q  227 aaaaatttctttcaaactttagtcc-tctaaatattttagtaccaattttagttc 280  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  44383303 aaaaatttctttcaaactttagtccctctaaatattttagtaccaattttagttc 44383249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 286 - 373
Target Start/End: Complemental strand, 43186222 - 43186136
Alignment:
Q  286 tttaagaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||| |||||||||||||||||| | |||||||||||| ||||||||| ||||| |||| ||||||| |||| |||||||||| ||||    
T  43186222 tttaggaaaaagataggtagacatcatttttcatacacttcttatgtacaccct-atgtattaggggcatttgagtaattttatatca 43186136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 291 - 366
Target Start/End: Original strand, 38845023 - 38845098
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattt 366  Q
    ||||||||||| || ||||| ||||| |||||||  | ||||| ||||| ||||||||||| ||||||||||||||    
T  38845023 gaaaaagatagataaacaccattttttatacacccttcatgtacacccttatgtgttagggttattttagtaattt 38845098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 7217956 - 7217874
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||    
T  7217956 gaaaaagataggtaaacaccctttttcatacacctcttatgtacaccctcatgtgttataggtattttagtaattttacatca 7217874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 291 - 373
Target Start/End: Original strand, 21390956 - 21391037
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    ||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||    
T  21390956 gaaaaagataggtagacaccctttttcatacaccttttatgtaca-cctcatgtgttaggggtattttagtaattttacatca 21391037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 44275896 - 44275815
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  44275896 gaaaaagatagatagacaccctttttcatacacctcttatgtacaccc-catgtgttaggggtattttagtaattttacatca 44275815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 3672465 - 3672383
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||||||||| |||||||||||||||| ||||||||| |||||||||| |||||||||||| ||||||| |||||||    
T  3672465 gaaaaagataggtagataccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatca 3672383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 291 - 373
Target Start/End: Original strand, 28093096 - 28093178
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||||||||||| |||||||||||||| ||||||||| |||| ||||| |||||||||||| |||| ||||||||||    
T  28093096 gaaaaagataggtagacatcctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtatttttacatca 28093178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 292 - 373
Target Start/End: Complemental strand, 35545102 - 35545021
Alignment:
Q  292 aaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggta-ttttagtaattttacatca 373  Q
    ||||||||||||||||||||||||||||||||| |||||||| || | ||||||||||||||| |||||||||||||||||||    
T  35545102 aaaaagataggtagacaccctttttcatacaccacttatgtacactc-catgtgttaggggtatttttagtaattttacatca 35545021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 49244005 - 49243924
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||| ||||||| |||||||||||||||||||||||| || | ||||| ||||||||||||||||||||||||||||    
T  49244005 gaaaaagatatgtagacatcctttttcatacacctcttatgtacactc-catgtattaggggtattttagtaattttacatca 49243924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 6112820 - 6112739
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    ||||||||||||||||||| ||||||||||||| ||||||||| || | ||||| |||||||||||| |||||||||||||||    
T  6112820 gaaaaagataggtagacactctttttcatacacttcttatgtacactc-catgtattaggggtatttgagtaattttacatca 6112739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 46192550 - 46192468
Alignment:
Q  291 gaaaaagataggtagacaccct-ttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||||||||||||||| |||| |||||||||||||||| |||| |||||   |||||||||||| | |||| ||||||    
T  46192550 gaaaaagataggtagacacccttttttgatacacctcttatgtacaccc-catgtaccaggggtattttaatcatttcacatca 46192468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 366
Target Start/End: Original strand, 52191201 - 52191275
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattt 366  Q
    ||||||||| |  ||||||||||||| ||||||||||  |||| |||| ||| ||||||| |||||||||||||||    
T  52191201 gaaaaagattgaaagacacccttttttatacacctctcgtgtacaccc-catatgttaggagtattttagtaattt 52191275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 21559752 - 21559670
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    ||||||||||| |||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  21559752 gaaaaagatagatagacaccatttttcatacacctcttatgtacacccccatgtgttaggggtattttagtaattttacatca 21559670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 291 - 373
Target Start/End: Original strand, 51339784 - 51339865
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    ||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| |||||||||||||||||||||||    
T  51339784 gaaaaagataggtagacaccctttttcatacacctcttatgtaca-catcatgtgttagaggtattttagtaattttacatca 51339865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 29472999 - 29472918
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||||||||||| ||||||||||||||| |||||| | |||| ||||||||||||||||||||||||||||||||||    
T  29472999 gaaaaagataggtagacatcctttttcatacaccacttatgcacaccc-catgtgttaggggtattttagtaattttacatca 29472918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 291 - 373
Target Start/End: Original strand, 46111944 - 46112026
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||||||||||||| |||||||||||||| |||| || | || ||||| ||||||||||||||||||||||||||||    
T  46111944 gaaaaagataggtagacaccatttttcatacaccttttatatacatccccatgtattaggggtattttagtaattttacatca 46112026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 292 - 373
Target Start/End: Complemental strand, 36749596 - 36749515
Alignment:
Q  292 aaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||||||||||| ||||||||||||| | ||||||| |||||||||| |||| ||||||| |||||||||||||||    
T  36749596 aaaaagataggtagacactctttttcatacactttttatgtacaccctcatgtattagaggtatttgagtaattttacatca 36749515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 290 - 373
Target Start/End: Complemental strand, 22894871 - 22894789
Alignment:
Q  290 agaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||||| ||||||||||||| ||||||| ||||||||| |||||||||| |||||||||||| ||||||| |||||||    
T  22894871 agaaaaagatagatagacaccctttt-catacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatca 22894789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 291 - 373
Target Start/End: Original strand, 30735496 - 30735578
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggta-ttttagtaattttacatca 373  Q
    |||||||||||||||||||||||||||||||||| |||||||| || | ||||||||||||||| |||||||||||| ||||||    
T  30735496 gaaaaagataggtagacaccctttttcatacaccacttatgtacactc-catgtgttaggggtatttttagtaatttaacatca 30735578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 291 - 373
Target Start/End: Original strand, 36370338 - 36370420
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||||||||| || ||||||||||||| | |||| || |||||||||| |||||||||||| |||||||||||||||    
T  36370338 gaaaaagataggtagatactctttttcatacactttttatatacaccctcatgtattaggggtatttgagtaattttacatca 36370420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 44000180 - 44000098
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    ||||||||||||||||||| ||||||||||||| | |||||||  ||||||||| |||| ||||||| |||||||||||||||    
T  44000180 gaaaaagataggtagacactctttttcatacactttttatgtacgccctcatgtattagaggtatttgagtaattttacatca 44000098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 48200876 - 48200794
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||||||||||| |||||||||||||| | ||||||| |||| ||||| ||| |||||||| |||||||||||||||    
T  48200876 gaaaaagataggtagacatcctttttcatacactttttatgtacacccccatgtattatgggtatttgagtaattttacatca 48200794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 291 - 373
Target Start/End: Original strand, 34749898 - 34749980
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||||  ||||| |||||||||||||| ||||||||| ||||  |||| |||||||||||| |||||||||||||||    
T  34749898 gaaaaagatagccagacatcctttttcatacacttcttatgtacacccctatgtattaggggtatttgagtaattttacatca 34749980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 366
Target Start/End: Original strand, 39467102 - 39467176
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattt 366  Q
    |||||||||||||| ||||||||||| |||||||||  ||||| | |||||||||||| || ||||||||||||||    
T  39467102 gaaaaagataggtacacacccttttttatacacctcccatgtaca-cctcatgtgttatggatattttagtaattt 39467176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 371
Target Start/End: Complemental strand, 38231483 - 38231403
Alignment:
Q  291 gaaaaagataggtagaca-ccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacat 371  Q
    |||||||||||||||||| || ||||| |||||||||||||||| |||| ||||||| ||||||| |||||| |||| ||||    
T  38231483 gaaaaagataggtagacatccttttttgatacacctcttatgtacaccc-catgtgtcaggggtagtttagtcatttcacat 38231403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 333
Target Start/End: Complemental strand, 50966309 - 50966267
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgta 333  Q
    ||||||||||||||||||  |||||||||||||||||||||||    
T  50966309 gaaaaagataggtagacattctttttcatacacctcttatgta 50966267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 333
Target Start/End: Complemental strand, 51069444 - 51069402
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgta 333  Q
    ||||||||||||||||||  |||||||||||||||||||||||    
T  51069444 gaaaaagataggtagacattctttttcatacacctcttatgta 51069402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 363
Target Start/End: Original strand, 39072279 - 39072350
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaa 363  Q
    ||||||||||||||||||| |||||| ||||| || | ||||| |||| ||||||| | ||||||||||||||    
T  39072279 gaaaaagataggtagacacacttttttatacatctttgatgtacaccc-catgtgtcaagggtattttagtaa 39072350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 13347319 - 13347237
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||| ||||||| |||||||    
T  13347319 gaaaaagataggtagacaccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatca 13347237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 39371118 - 39371036
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||| ||||| |||||||||||| |||||||||||||||    
T  39371118 gaaaaagataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatca 39371036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 291 - 373
Target Start/End: Original strand, 40887942 - 40888024
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| ||| | |||| |||||||||||||||||||||||    
T  40887942 gaaaaagataggtagacaccctttttcatacacctcttatgtacacccccatctattagaggtattttagtaattttacatca 40888024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 2237467 - 2237385
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||| || || |||||||||||| |||||||||||||||    
T  2237467 gaaaaagataggtagacaccctttttcatacacttcttatgtacacccccaagtattaggggtatttgagtaattttacatca 2237385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 31800748 - 31800667
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||||| ||||||||||||||||||||||||| |||| |||| ||| ||||||||||||||||||||||||||||||    
T  31800748 gaaaaagataggcagacaccctttttcatacacctcttgtgtacaccc-catatgttaggggtattttagtaattttacatca 31800667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 42683790 - 42683708
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    ||||||||||| |||||| |||||||||||||||||||||||| |||| ||| | ||||||||||||||||||||||||||||    
T  42683790 gaaaaagatagatagacatcctttttcatacacctcttatgtacacccccatatattaggggtattttagtaattttacatca 42683708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 293 - 373
Target Start/End: Original strand, 27553376 - 27553455
Alignment:
Q  293 aaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||| |||| ||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||    
T  27553376 aaaaaatagatagacaccctttttcatacacctcttatgtacaccct-atgtgttaggagtattttagtaattttacatca 27553455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 14831735 - 14831653
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||||||| |||||||||||||||||| ||||||||| ||||  | || |||||||||||| | |||||||||||||    
T  14831735 gaaaaagataggtaaacaccctttttcatacacttcttatgtacacccctacgtattaggggtatttgaataattttacatca 14831653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 306 - 373
Target Start/End: Original strand, 9408054 - 9408121
Alignment:
Q  306 acaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    ||||| |||||||||||| ||||||||| |||| ||| | |||||||||||| |||||||||||||||    
T  9408054 acaccatttttcatacacttcttatgtacacccccatatattaggggtatttgagtaattttacatca 9408121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 291 - 373
Target Start/End: Original strand, 1815620 - 1815698
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||||||||||||| ||||||||| |      ||||| ||||| |||||||||||||||||||||||||||||||||    
T  1815620 gaaaaagataggtagacaccttttttcataaagaa---atgtacaccct-atgtgttaggggtattttagtaattttacatca 1815698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 373
Target Start/End: Original strand, 4300544 - 4300625
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    ||||||||| | |||||| ||||||| ||||| |||| ||||| ||| ||||||||||||| ||||||| |||||| ||||||    
T  4300544 gaaaaagattgatagacatccttttttatacatctctcatgtacacc-tcatgtgttagggatattttaataatttcacatca 4300625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 373
Target Start/End: Complemental strand, 12164432 - 12164363
Alignment:
Q  304 agacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    ||||||||||||| || ||||||||||||| |||  |||||   ||||| ||||||||||||| ||||||    
T  12164432 agacacccttttttatgcacctcttatgtacacctccatgtagcaggggcattttagtaatttcacatca 12164363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 371
Target Start/End: Original strand, 19596068 - 19596148
Alignment:
Q  291 gaaaaagataggtagaca-ccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacat 371  Q
    |||||||||||||||||| || ||||| | | |||||||||||| |||| ||||||| ||||||| |||||| |||| ||||    
T  19596068 gaaaaagataggtagacatccttttttgaaatacctcttatgtacaccc-catgtgtcaggggtagtttagtcatttcacat 19596148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 291 - 373
Target Start/End: Original strand, 3118047 - 3118129
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||||||||||| ||||||||||||| |||||||||| || | ||||| ||||||||||||||||||||||||||||    
T  3118047 gaaaaagataggtagacatcctttttcatacatctcttatgtacactcccatgtattaggggtattttagtaattttacatca 3118129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 289 - 373
Target Start/End: Complemental strand, 14023126 - 14023043
Alignment:
Q  289 aagaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||||||||||||||||||||| |||||||||  ||||| | |||||||||||||||||||||||||||||| ||||||    
T  14023126 aagaaaaagataggtagacacccttttttatacacctcccatgtaca-cctcatgtgttaggggtattttagtaatttcacatca 14023043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 24208634 - 24208553
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||||||||||| ||||||| |||||||||| || || ||| |||||||||||||||||||||||||||| ||||||    
T  24208634 gaaaaagataggtagacatccttttttatacacctctcatttacacc-tcatgtgttaggggtattttagtaatttcacatca 24208553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 291 - 373
Target Start/End: Original strand, 3986906 - 3986987
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||||||||||| | |||||||||||  | |||||||||||| ||||| ||| |||||||| |||||||||||||||    
T  3986906 gaaaaagataggtagacatcatttttcatacatttattatgtataccc-catgtattaagggtatttgagtaattttacatca 3986987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 291 - 366
Target Start/End: Original strand, 15345660 - 15345734
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattt 366  Q
    |||||| ||||||||||| | |||||||||||| ||||||||| ||||| |||| ||||||| |||| ||||||||    
T  15345660 gaaaaaaataggtagacatcttttttcatacacttcttatgtacaccct-atgtattaggggcatttgagtaattt 15345734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 13697758 - 13697677
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||||||||| | | |||||||||||   |||||||| |||| |||||||||| | |||||||||||||||| ||||    
T  13697758 gaaaaagataggtagagatcatttttcatacattacttatgtacaccc-catgtgttagagatattttagtaattttatatca 13697677  T

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Target: scaffold0043 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 291 - 368
Target Start/End: Original strand, 87163 - 87239
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaatttta 368  Q
    |||||||||||||||||||| |||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||    
T  87163 gaaaaagataggtagacaccttttttcatacaccttttatgtacaccc-catgtgttaggggtattttagtaatttta 87239  T

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Target: scaffold0062 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 6909 - 6827
Alignment:
Q  291 gaaaaagataggtagacaccctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatca 373  Q
    |||||||||||||||| ||| |||||||||||| ||||||||| |||||||||| |||||| ||||| |||||||||||||||    
T  6909 gaaaaagataggtagataccttttttcatacacttcttatgtacaccctcatgtattagggatatttaagtaattttacatca 6827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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