View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20071_low_37 (Length: 362)
Name: NF20071_low_37
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20071_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 17 - 350
Target Start/End: Original strand, 53803089 - 53803422
Alignment:
| Q |
17 |
tcaactacattcttctctgaaatattatccattgcctttgaccatttgttaaggactacaaacacaggtggcgcaccaaagggagttgaatcattctgta |
116 |
Q |
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| T |
53803089 |
tcaactacattcttctctgaaatattatccattgcctttgaccatttgttaaggaccacaaacacaggtggcgcaccaaagggagttgaatcattctgta |
53803188 |
T |
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| Q |
117 |
gttcttcagattcatacattagacatcttactagccaatcattcagggctttcacatggaacttttgagcttgaatccaatctaagaagcttaagttcca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53803189 |
gttcttcagattcatacattagacatcttactagccaatcattcagggctttcacatggaacttttgagcttgaatccaatctaagaagcttaagttcca |
53803288 |
T |
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| Q |
217 |
tttctgtaactcggatttgagctttattgctgcatcaatattagcattgcaaggctttctgttaaatgaggagacatctaaagctttggtttcaacaatt |
316 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53803289 |
tttctgtaactcggttttgagctttattgctgcatcaatattagcattgcaaggctttctgttaaatgaggagacatctaaagctttggtttcaacaatt |
53803388 |
T |
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| Q |
317 |
tcctgatactggcgtttgtaacattcttgcatat |
350 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
53803389 |
tcctgatactggcgtttgtaacattcttgcatat |
53803422 |
T |
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