View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20071_low_4 (Length: 762)

Name: NF20071_low_4
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20071_low_4
NF20071_low_4
[»] chr8 (14 HSPs)
chr8 (419-676)||(12140778-12141033)
chr8 (305-414)||(12137841-12137951)
chr8 (676-753)||(12142217-12142294)
chr8 (78-269)||(12136882-12137087)
chr8 (690-757)||(12141179-12141246)
chr8 (305-400)||(12058394-12058489)
chr8 (319-406)||(12062434-12062521)
chr8 (333-419)||(15653376-15653462)
chr8 (319-419)||(15970581-15970680)
chr8 (333-419)||(15629534-15629620)
chr8 (333-406)||(12067199-12067272)
chr8 (333-406)||(15609513-15609586)
chr8 (305-400)||(12039863-12039959)
chr8 (647-676)||(12142149-12142178)


Alignment Details
Target: chr8 (Bit Score: 163; Significance: 1e-86; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 419 - 676
Target Start/End: Original strand, 12140778 - 12141033
Alignment:
Q  419 cagatgatgattttaaatcatccagcatagccgaaagtggtgatgtgaaggaagacgagaaatctgtgcccaagaaggatgctgctgtctttactgagtt 518  Q
    |||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12140778 cagatgatgattctaaatcatccagcacaaccgaaagtggtgatgtgaaggaagacgaggaatctgtgcccaagaaggatgctgctgtctttactgagtt 12140877  T
Q  519 gggaactgatgcagcgggtaagagataaaccatcctgttgccagtggatttattttcatatatacttatttcactgtttttgttttaaactctagaaagg 618  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||  |||||||  |  ||||||||||||| | || |||||    
T  12140878 gggaactgatgcagcgggtaagagataaaccatcctgttgccattggatttatttttatatactcttattttgcactttttgttttaaattttaaaaagg 12140977  T
Q  619 tcttgacagtgcttatatgattatatatctatacatttgaaatcattttgttggcact 676  Q
    |||  ||||||||||||||||  |||||||||||||||  ||| ||||| ||||||||    
T  12140978 tctcaacagtgcttatatgat--tatatctatacatttagaataattttcttggcact 12141033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 305 - 414
Target Start/End: Original strand, 12137841 - 12137951
Alignment:
Q  305 ttctagtaacgccattcaagattttgaaatttattgatatggatcatttctctaattatcttttacatgtttgctgattcagtttatttcattttatgaa 404  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||  || |||||||||| |||||| ||||||||||||||||||||||||||||||    
T  12137841 ttctagtaatgccattcaagattttgaaatttattgatattgatcatgcctgtaattatcttgtacatggttgctgattcagtttatttcattttatgaa 12137940  T
Q  405 -ttaagattat 414  Q
     ||||||||||    
T  12137941 tttaagattat 12137951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 676 - 753
Target Start/End: Original strand, 12142217 - 12142294
Alignment:
Q  676 tcatgtgtgtatcttcttgattttttcaagatgagacttttcacattgaaaaaacttattacagaaccattcctttgc 753  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  12142217 tcatgtgtgtatcttcttgattttttcaagatgagacttttcacattgaaaaaacttattacagaatcattcctttgc 12142294  T

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Target: chr8; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 78 - 269
Target Start/End: Original strand, 12136882 - 12137087
Alignment:
Q  78 tctatgttgtggtcacattgtaaatgagacgacgatcatgtccatgtctctctagaggtaccattttttatcgctca-------------ctttttaaat 164  Q
    |||| |||||| |||||||| |||||||| |||||||||||||||||||||||||||||| | ||||| || ||  |             |||||||||     
T  12136882 tctaagttgtgatcacattgaaaatgagatgacgatcatgtccatgtctctctagaggtaacctttttgattgcatattattctgttgtgctttttaaac 12136981  T
Q  165 gataagcgactgggcgtcatagtattgtattttgaccagaatt-ctttttaacatttcatagcagtttttgtttggggaaaaacaattgttatagttatt 263  Q
    |||||||||||  ||||  |||||||  ||||  | ||||||| |||||||||| || |||||||||||||||||||||||| |||||||||| ||||||    
T  12136982 gataagcgactaagcgttgtagtatttaatttctagcagaatttctttttaacacttaatagcagtttttgtttggggaaaaccaattgttattgttatt 12137081  T
Q  264 tatata 269  Q
    ||||||    
T  12137082 tatata 12137087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 690 - 757
Target Start/End: Original strand, 12141179 - 12141246
Alignment:
Q  690 tcttgattttttcaagatgagacttttcacattgaaaaaacttattacagaaccattcctttgctact 757  Q
    |||||||||||||||||||||||||||||||||| |||| | ||| |||||| |||||||||||||||    
T  12141179 tcttgattttttcaagatgagacttttcacattgcaaaatcgtataacagaaacattcctttgctact 12141246  T

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Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 305 - 400
Target Start/End: Complemental strand, 12058489 - 12058394
Alignment:
Q  305 ttctagtaacgccattcaagattttgaaatttattgatatggatcatttctctaattatcttttacatgtttgctgattcagtttatttcatttta 400  Q
    ||||||||| | ||||||||||||||| | ||||| |||| |||| |  ||  |||||||||||||||| ||  ||||||||||||||||||||||    
T  12058489 ttctagtaatgacattcaagattttgataattattaatattgatcttggcttgaattatcttttacatggtttgtgattcagtttatttcatttta 12058394  T

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Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 319 - 406
Target Start/End: Complemental strand, 12062521 - 12062434
Alignment:
Q  319 ttcaagattttgaaatttattgatatggatcatttctctaattatcttttacatgtttgctgattcagtttatttcattttatgaatt 406  Q
    |||| ||||| || |||| ||||||| |||||| | || ||||||||||||| ||  | |||||||||||||||||||||||||||||    
T  12062521 ttcatgatttcgatatttgttgatattgatcatgtttcaaattatcttttacgtggcttctgattcagtttatttcattttatgaatt 12062434  T

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Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 333 - 419
Target Start/End: Original strand, 15653376 - 15653462
Alignment:
Q  333 atttattgatatggatcatttctctaattatcttttacatgtttgctgattcagtttatttcattttatgaattaagattattccgc 419  Q
    |||||||||||| |||||| | || |||||||||||||||   | ||||||| ||||||||||||||||||||| | ||||| ||||    
T  15653376 atttattgatattgatcatgtttcaaattatcttttacatagcttctgattcggtttatttcattttatgaattcaaattataccgc 15653462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 319 - 419
Target Start/End: Complemental strand, 15970680 - 15970581
Alignment:
Q  319 ttcaagattttgaaatttattgatatggatcatttctctaattatcttttacatgtttgctgattcagtttatttcattttatgaattaagattattccg 418  Q
    |||| ||||||||||||||||||||| | |||| | || ||||||||||||||||  | ||||||| |||| |||||||||| ||||| | ||||| |||    
T  15970680 ttcatgattttgaaatttattgatattgttcatgtttcaaattatcttttacatggcttctgattcggttt-tttcattttacgaattcaaattataccg 15970582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 333 - 419
Target Start/End: Original strand, 15629534 - 15629620
Alignment:
Q  333 atttattgatatggatcatttctctaattatcttttacatgtttgctgattcagtttatttcattttatgaattaagattattccgc 419  Q
    |||||||||||| |||||| | || |||||||||||||||   | ||||||| |||||||||||||||| |||| | ||||| ||||    
T  15629534 atttattgatattgatcatgtttcaaattatcttttacatagcttctgattcggtttatttcattttataaattcaaattataccgc 15629620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 333 - 406
Target Start/End: Complemental strand, 12067272 - 12067199
Alignment:
Q  333 atttattgatatggatcatttctctaattatcttttacatgtttgctgattcagtttatttcattttatgaatt 406  Q
    |||||||||||| |||||| | || |||||||||||||||| ||  | |||| ||||||||| |||||||||||    
T  12067272 atttattgatattgatcatgtttcaaattatcttttacatggttaataattcggtttatttctttttatgaatt 12067199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 333 - 406
Target Start/End: Original strand, 15609513 - 15609586
Alignment:
Q  333 atttattgatatggatcatttctctaattatcttttacatgtttgctgattcagtttatttcattttatgaatt 406  Q
    |||||||||||| |||||| | |  |||||||||||||||   | ||||||| |||||||||||||||||||||    
T  15609513 atttattgatattgatcatgttttaaattatcttttacatagcttctgattcggtttatttcattttatgaatt 15609586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 305 - 400
Target Start/End: Complemental strand, 12039959 - 12039863
Alignment:
Q  305 ttctagtaacgccattcaagattttgaaatttattgatatggatcatttctc-taattatcttttaca-tgtttgctgattcagtttatttcatttta 400  Q
    ||||||||| | ||||||||||||||| ||||||| |||| |||| |  |||  |||||||| ||||| |||||| | ||||||||||||||||||||    
T  12039959 ttctagtaatgacattcaagattttgatatttattaatattgatcttggctcgaaattatctcttacattgtttg-ttattcagtttatttcatttta 12039863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 647 - 676
Target Start/End: Original strand, 12142149 - 12142178
Alignment:
Q  647 ctatacatttgaaatcattttgttggcact 676  Q
    ||||||||||||||||||||||||||||||    
T  12142149 ctatacatttgaaatcattttgttggcact 12142178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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