View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20071_low_40 (Length: 351)
Name: NF20071_low_40
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20071_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 73 - 342
Target Start/End: Complemental strand, 24821635 - 24821356
Alignment:
| Q |
73 |
catgtattgttggcccataccagctatgttttctggtgaaattagaattggctaagtaacatggatttggcatcttaagggattggatggaggg------ |
166 |
Q |
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| T |
24821635 |
catggattgttggcccataccagctatgttttctggtgaaattagaattggctaagtaacatggatttggcatcttaagggattggatggagggttttgg |
24821536 |
T |
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| Q |
167 |
----gagaactcacttttctctttaaattatggactttataatannnnnnnnnnnnnacggactttataatatggatttagcatcttaagtattttctat |
262 |
Q |
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| T |
24821535 |
aggggagaactcacttttctctttaaattatggacttcataatatgtttttttatttacggaatttataatattgatttagcatcttaagtattttctat |
24821436 |
T |
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| Q |
263 |
gtttcttttgaagtagaaggttttgttcaatgtattatgatgtttcatgcattatgcacattgtgggattttggcctttg |
342 |
Q |
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| T |
24821435 |
gtttcttttgaagtagaaggttttgttcaatgtattatgatgtttcatgcattatgcacattgtgggattttggcctttg |
24821356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 24821771 - 24821722
Alignment:
| Q |
25 |
gttttctggacatatgtcggacaccggacacatgttgtcagacaccaaca |
74 |
Q |
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| T |
24821771 |
gttttctggacatatgtcggacaccggacacatgttgtcagacaccaaca |
24821722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 78 - 151
Target Start/End: Complemental strand, 24821177 - 24821104
Alignment:
| Q |
78 |
attgttggcccataccagctatgttttctggtgaaattagaattggctaagtaacatggatttggcatcttaag |
151 |
Q |
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| T |
24821177 |
attgttggcctataccagctttatttcctggtgaaatcagaattgactaagtaacatggattttgaatcttaag |
24821104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 310
Target Start/End: Complemental strand, 24821918 - 24821857
Alignment:
| Q |
249 |
taagtattttctatgtttcttttgaagtagaaggttttgttcaatgtattatgatgtttcat |
310 |
Q |
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|||||||||||| | ||||||||||||| |||| ||||||| ||||| |||||| ||||||| |
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| T |
24821918 |
taagtattttctttttttcttttgaagttgaagcttttgtttaatgttttatgaggtttcat |
24821857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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