View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20071_low_42 (Length: 343)
Name: NF20071_low_42
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20071_low_42 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 14 - 327
Target Start/End: Complemental strand, 511094 - 510784
Alignment:
| Q |
14 |
aggatgaagaaaatatgtgtttgaaagnnnnnnnnncagtatcatatttcataagttgaatctagattttgacaaaatagttaaagaggttatcgcttaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
511094 |
aggatgaagaaaatatgtgtttgaaa---aaaaaaacagtatcatatttcataagttgaatctatattttgacaaaatagttaaagaggttatcgcttaa |
510998 |
T |
|
| Q |
114 |
aattggatgaaggataaaatcaaaagtggtgaaatatcaagtgcttaataataatagtgagtgtaaattttattttatgtaacttgaggacttaaacaaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
510997 |
aattggatgaaggataaaatcaaaagtggtgaaatatcaagtgcttaataataatagtgagtgtaaattttattttatgtaacttgaggacttaaacaaa |
510898 |
T |
|
| Q |
214 |
gtttggtatataatcattggtgcacaaatacgtgaagaagagtggcgaaaatcagctcctaaatatttacgcttaaatgatgatgtgggttgttttcttg |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
510897 |
gtttggtatataatcattggtgcacaaatacttgaagaagagtggcgaaaatcagctcctaaatatttacgcttaaatgatgatgtgggttgttttcttg |
510798 |
T |
|
| Q |
314 |
gaagaggcaaaaga |
327 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
510797 |
gaagaggcaaaaga |
510784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 65 - 227
Target Start/End: Complemental strand, 10069559 - 10069395
Alignment:
| Q |
65 |
taagttgaatctagattttgacaaaatagttaaagaggttatcgcttaaaattggatgaaggataaaatcaaaagtggtgaaatatcaagtgcttaataa |
164 |
Q |
| |
|
|||||| |||| | |||||| ||||||| || |||||||||| ||||| |||| ||||||||||||||||||||| ||||||||| |||| |||||||| |
|
|
| T |
10069559 |
taagttaaatccatattttggcaaaataattgaagaggttattgcttagaattagatgaaggataaaatcaaaagcagtgaaatataaagtacttaataa |
10069460 |
T |
|
| Q |
165 |
taata--gtgagtgtaaattttattttatgtaacttgaggacttaaacaaagtttggtatataat |
227 |
Q |
| |
|
||||| |||||||||| || ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10069459 |
taatagtgtgagtgtaagttctattttatgtaacatgaggacttaaacaaagtttggtatataat |
10069395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University